Statistics: Genome Annotation

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Human Genome: Current Statistics -- Build 27

Summary of the GenBank source sequences, the contigs, and the features annotated on the sequence based on sequence information available on October 28, 2001. Also summarizes the objects on each non-sequence-based map in the MapViewer.

These statistics are based on the assembly and annotation process documented here.

See also the current release notes.

Statistics reports from these related resources are also available:

Resource	Scope
Cytogenetics	A cytogenetic resource of FISH-mapped, sequence-tagged clones
dbSNP	Dabase of SNPs and other genetic variation
LocusLink	Focal point for genes and associated information (fruit fly, human, mouse, rat, zebrafish)
RefSeq	NCBI Reference mRNAs and proteins for human, mouse, rat
UniGene	Human UniGene clusters
UniSTS	STS markers

GenBank source sequences

Framework assemblies

Number of contigs generated	3140
Length of sequence assembled (X10³)	2867544

Contigs categorized by type of source sequence

Contigs categorized by size

Clones, markers, genes, variation annotated on the sequence (by chromosome)

maps based on the sequence assembly

Chr	Clone	Comp	Contig	GScan	Genes	RNA	STS	UniG_Hs	UniG_Mm	Variation	gbDNA
1	1182	3059	191	4807	3414	3430	10498	15791	2982	187906	4928
2	470	2144	276	3944	2673	2684	7297	13153	2255	145220	5414
3	342	2144	334	3133	2094	2107	6356	10535	1999	126678	2493
4	399	1838	332	2403	1659	1667	6803	7827	1233	109263	2156
5	266	2331	258	2864	1960	2012	5881	9108	1585	145615	2582
6	905	2347	80	3098	2107	2118	6300	9774	1492	137981	5578
7	327	1719	106	2930	1939	1960	6972	9646	1132	120163	3155
8	297	1584	208	2348	1570	1584	4278	7072	1006	98097	1684
9	369	1186	82	2234	1533	1538	3914	7164	1179	86799	1856
10	488	1479	143	2618	1720	1731	4687	8121	1199	103235	2250
11	390	1974	128	3023	2151	2182	5947	8463	1882	116993	3038
12	288	1441	145	2420	1736	1753	5645	8666	1613	89258	2474
13	293	1100	51	1510	978	980	2860	4484	742	71983	1063
14	210	816	26	1684	1192	1194	4434	5701	1055	62375	4512
15	258	868	94	1734	1142	1156	3121	5907	1076	60294	1652
16	245	880	99	1969	1367	1377	3183	5890	1218	62022	1829
17	139	845	111	2239	1604	1629	3868	7535	1421	57472	2297
18	86	1056	109	1327	886	888	2281	3469	607	61308	1027
19	66	925	94	2222	1766	1783	2650	6425	1147	43402	2569
20	320	635	15	1354	951	959	2839	4190	769	44007	1141
21	73	476	6	631	451	462	1707	2145	269	44177	1346
22	304	534	18	1094	761	772	1972	3524	363	34866	2845
X	900	1694	180	2121	1564	1580	5078	4454	964	44289	2487
Y	27	202	8	324	252	253	479	268	57	3054	273
Total	8645	33324	3139	54111	37519	37848	109089	169410	29262	2057779	60701

Maps in non-sequence coordinates (genetic, cytogenetic, physical)

Genetic

maps in cytogenetic coordinates

Chr	FISH_Clones	Genes	Mitelman	Morbid
1	1424	4195	930	194
2	510	3180	261	128
3	422	2554	559	109
4	453	1963	162	68
5	387	2338	606	85
6	991	2573	622	94
7	361	2433	632	85
8	325	1841	325	63
9	421	1862	496	75
10	528	1971	214	73
11	486	2736	643	125
12	331	2080	430	85
13	300	1098	338	38
14	242	1658	312	53
15	275	1437	163	58
16	294	1800	217	75
17	169	2115	355	107
18	110	1017	142	31
19	81	2271	185	88
20	444	1140	150	30
21	112	596	154	24
22	373	1026	308	41
X	1017	2055	97	205
Y	18	332	5	7
Total	10074	46271	8306	1941

physical maps

Chr	GM99_G3	GM99_GB4	NCBI_RH	Stanford_G3	TNG	WI_RH	WI_YAC
1	661	5351	2433	551	4404	1363	913
2	586	3191	1615	515	2978	1177	948
3	527	3063	1573	501	3110	1057	815
4	494	2088	1398	709	4281	759	726
5	283	2299	1189	350	2128	805	657
6	422	3156	1594	407	2002	831	632
7	461	2249	1094	419	1678	799	568
8	276	1797	979	276	1759	631	566
9	266	1795	852	271	1387	632	402
10	371	2053	1194	358	1656	700	517
11	385	2606	1315	411	1613	819	501
12	323	2412	1286	326	1520	758	495
13	156	1032	591	162	1002	364	312
14	276	1616	905	260	1063	512	345
15	214	1563	790	191	1038	504	301
16	192	1284	683	210	1099	441	254
17	265	1847	929	230	915	456	239
18	163	789	487	177	868	334	311
19	200	1672	722	182	468	374	80
20	167	1317	720	159	552	354	270
21	88	442	338	156	972	143	112
22	109	789	337	112	277	269	141
X	176	1347	703	179	492	492	367
Y	-	-	-	73	114	-	-
Total	7061	45758	23727	7185	37376	14574	10472

Last updated December 17, 2001

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