Statistics: Genome Annotation

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Human Genome: Current Statistics -- Build 26

Summary of the GenBank source sequences, the contigs, and the features annotated on the sequence based on sequence information available on September 24, 2001. Also summarizes the objects on each non-sequence-based map in the MapViewer.

These statistics are based on the assembly and annotation process documented here.

See also the current release notes.

Statistics reports from these related resources are also available:

Resource	Scope
Cytogenetics	A cytogenetic resource of FISH-mapped, sequence-tagged clones
dbSNP	Dabase of SNPs and other genetic variation
LocusLink	Focal point for genes and associated information (fruit fly, human, mouse, rat, zebrafish)
RefSeq	NCBI Reference mRNAs and proteins for human, mouse, rat
UniGene	Human UniGene clusters
UniSTS	STS markers

GenBank source sequences

Framework assemblies

Number of contigs generated	3120
Length of sequence assembled (X10³)	2863864

Contigs categorized by type of source sequence

Contigs categorized by size

Clones, markers, genes, variation annotated on the sequence (by chromosome)

maps based on the sequence assembly

Chr	Clone	Contig	GScan	GenBank	Genes	RNA	STS	UniGene	Variation
1	1199	199	4757	3116	1827	3444	10669	15704	180126
2	478	277	3870	2158	1108	2089	7382	13060	138741
3	348	334	3119	2123	962	1756	6408	10417	122546
4	327	310	2424	1787	665	1138	6831	7771	103471
5	274	234	2822	2367	850	1614	5985	9089	135950
6	913	85	3070	2351	990	1871	6396	9749	134108
7	326	117	2896	1732	833	1551	7043	9622	113139
8	288	198	2293	1577	598	1072	4312	6959	85441
9	365	88	2168	1198	695	1273	4070	7103	82373
10	454	140	2620	1479	663	1294	4816	8059	97840
11	388	119	2970	2000	997	1895	6071	8438	113003
12	284	146	2424	1448	961	1789	5773	8638	87443
13	278	63	1501	1095	326	574	2896	4442	68734
14	211	28	1665	821	554	1044	4502	5684	60625
15	265	97	1742	914	569	1049	3215	5939	56694
16	246	97	1982	901	764	1415	3214	5892	58674
17	134	106	2205	842	1015	1855	3927	7528	55939
18	92	102	1322	1081	286	484	2301	3463	60064
19	63	113	2192	903	1206	2285	2663	6344	40614
20	322	13	1352	634	499	989	2893	4150	41974
21	76	7	638	477	203	452	1736	2165	44097
22	319	18	1083	535	467	904	2007	3529	34288
X	902	173	2084	1677	705	1267	5090	4405	42484
Y	27	8	316	202	85	121	477	263	3071
Total	8582	3120	53608	33488	17834	33236	110752	168558	1963437

Maps in non-sequence coordinates (genetic, cytogenetic, physical)

Genetic

maps in cytogenetic coordinates

Chr	FISH_Clones	Genes	Mitelman	Morbid
1	1411	1664	992	190
2	501	1061	254	124
3	417	885	547	105
4	352	636	145	68
5	383	727	594	84
6	985	966	582	93
7	334	883	591	82
8	311	504	330	61
9	404	656	500	75
10	462	570	193	72
11	465	1125	664	125
12	312	861	453	85
13	287	279	323	37
14	228	688	349	49
15	270	516	151	57
16	284	736	236	73
17	160	962	391	104
18	109	241	144	31
19	78	1139	214	88
20	443	426	155	29
21	109	230	153	24
22	370	513	321	41
X	946	813	91	199
Y	18	75	7	6
Total	9639	17156	8380	1902

physical maps

Chr	GM99_G3	GM99_GB4	NCBI_RH	Stanford_G3	TNG	WI_RH	WI_YAC
1	661	5351	2433	551	4404	1363	913
2	586	3191	1615	515	2978	1177	948
3	527	3063	1573	501	3110	1057	815
4	494	2088	1398	709	4281	759	726
5	283	2299	1189	350	2128	805	657
6	422	3156	1594	407	2002	831	632
7	461	2249	1094	419	1678	799	568
8	276	1797	979	276	1759	631	566
9	266	1795	852	271	1387	632	402
10	371	2053	1194	358	1656	700	517
11	385	2606	1315	411	1613	819	501
12	323	2412	1286	326	1520	758	495
13	156	1032	591	162	1002	364	312
14	276	1616	905	260	1063	512	345
15	214	1563	790	191	1038	504	301
16	192	1284	683	210	1099	441	254
17	265	1847	929	230	915	456	239
18	163	789	487	177	868	334	311
19	200	1672	722	182	468	374	80
20	167	1317	720	159	552	354	270
21	88	442	338	156	972	143	112
22	109	789	337	112	277	269	141
X	176	1347	703	179	492	492	367
Y	-	-	-	73	114	-	-
Total	7061	45758	23727	7185	37376	14574	10472

Last updated October 18, 2001

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