Statistics: Genome Annotation

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Human Genome: Current Statistics -- Build 25

Summary of the GenBank source sequences, the contigs, and the features annotated on the sequence based on sequence information available on August 7, 2001. Also summarizes the objects on each non-sequence-based map in the MapViewer.

These statistics are based on the assembly and annotation process documented here.

See also the current release notes.

Statistics reports from these related resources are also available:

Resource	Scope
Cytogenetics	A cytogenetic resource of FISH-mapped, sequence-tagged clones
dbSNP	Dabase of SNPs and other genetic variation
LocusLink	Focal point for genes and associated information (fruit fly, human, mouse, rat, zebrafish)
RefSeq	NCBI Reference mRNAs and proteins for human, mouse, rat
UniGene	Human UniGene clusters
UniSTS	STS markers

GenBank source sequences

Framework assemblies

Number of contigs generated	3347
Length of sequence assembled (X10³)	2840891

Contigs categorized by type of source sequence

Contigs categorized by size

Clones, markers, genes, variation annotated on the sequence (by chromosome)

maps based on the sequence assembly

Chr	Clone	Contig	GScan	GenBank	Genes	RNA	STS	UniGene	Variation
1	1125	196	4499	2983	1804	3366	10519	15435	137426
2	465	304	3634	2107	1104	2080	7184	12809	106952
3	346	339	2991	2083	956	1698	6386	10485	99301
4	328	327	2143	1728	658	1115	6775	7594	81605
5	279	256	2613	2262	844	1566	5854	8855	116658
6	897	109	2940	2315	978	1847	6362	9696	103511
7	329	141	2685	1663	815	1491	6933	9357	81378
8	250	212	2126	1553	591	1040	4308	6927	57692
9	341	94	2089	1195	693	1238	4049	7071	62523
10	413	117	2490	1469	659	1274	4778	7898	65275
11	382	130	2857	1995	988	1822	5955	8307	90903
12	282	154	2238	1403	944	1758	5678	8529	66839
13	264	77	1368	1077	314	558	2953	4358	56004
14	209	28	1565	825	554	1056	4464	5637	48907
15	256	100	1607	895	565	1011	3161	5811	39031
16	249	110	1905	900	751	1347	3117	5832	45599
17	134	117	2201	840	1011	1862	3897	7569	37859
18	88	106	1256	1067	293	492	2321	3471	51060
19	62	123	2162	871	1179	2166	2652	6378	31921
20	365	12	1315	633	492	955	2878	4109	32272
21	79	7	572	105	196	434	1734	2115	23863
22	321	16	1067	533	464	881	1981	3511	28436
X	890	192	1907	1623	709	1257	5041	4352	33552
Y	28	16	291	233	87	121	490	251	1226
Un	2	64	105	73	13	19	98	154	2113
Total	8384	3347	50626	32431	17662	32454	109568	166511	1501906

Maps in non-sequence coordinates (genetic, cytogenetic, physical)

Genetic

maps in cytogenetic coordinates

Chr	FISH_Clones	Genes	Mitelman	Morbid
1	1411	1731	992	188
2	501	1076	254	122
3	417	948	547	104
4	352	649	145	68
5	383	763	594	82
6	985	987	582	92
7	334	894	591	80
8	264	563	330	61
9	404	690	500	74
10	462	599	193	73
11	465	1139	664	125
12	312	888	453	85
13	287	282	323	37
14	228	796	349	51
15	270	532	151	57
16	284	743	236	73
17	160	1019	391	104
18	109	253	144	31
19	78	1168	214	88
20	443	462	155	29
21	109	235	153	24
22	370	519	321	40
X	946	828	91	198
Y	18	78	7	4
Un	-	-	-	-
Total	9592	17842	8380	1890

physical maps

Chr	GM99_G3	GM99_GB4	NCBI_RH	Stanford_G3	TNG	WI_RH	WI_YAC
1	661	5351	2433	551	4404	1363	913
2	586	3191	1615	515	2978	1177	948
3	527	3063	1573	501	3110	1057	815
4	494	2088	1398	709	4281	759	726
5	283	2299	1189	350	2128	805	657
6	422	3156	1594	407	2002	831	632
7	461	2249	1094	419	1678	799	568
8	276	1797	979	276	1759	631	566
9	266	1795	852	271	1387	632	402
10	371	2053	1194	358	1656	700	517
11	385	2606	1315	411	1613	819	501
12	323	2412	1286	326	1520	758	495
13	156	1032	591	162	1002	364	312
14	276	1616	905	260	1063	512	345
15	214	1563	790	191	1038	504	301
16	192	1284	683	210	1099	441	254
17	265	1847	929	230	915	456	239
18	163	789	487	177	868	334	311
19	200	1672	722	182	468	374	80
20	167	1317	720	159	552	354	270
21	88	442	338	156	972	143	112
22	109	789	337	112	277	269	141
X	176	1347	703	179	492	492	367
Y	-	-	-	73	114	-	-
Un	-	-	-	-	-	-	-
Total	7061	45758	23727	7185	37376	14574	10472

Last updated August 29, 2001

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