Statistics: Genome Annotation

	NCBI Home Genomic Biology Human Statistics

	Search for

Human Genome: Current Statistics -- Build 24

Summary of the GenBank source sequences, the contigs, and the features annotated on the sequence based on sequence information available on July 3, 2001. Also summarizes the objects on each non-sequence-based map in the MapViewer.

These statistics are based on the assembly and annotation process documented here.

Statistics reports from these related resources are also available:

Resource	Scope
Cytogenetics	A cytogenetic resource of FISH-mapped, sequence-tagged clones
dbSNP	Dabase of SNPs and other genetic variation
LocusLink	Focal point for genes and associated information (fruit fly, human, mouse, rat, zebrafish)
RefSeq	NCBI Reference mRNAs and proteins for human, mouse, rat
UniGene	Human UniGene clusters
UniSTS	STS markers

GenBank source sequences

Framework assemblies

Number of contigs generated	3539
Length of sequence assembled (X10⁹)	2794916

Contigs categorized by type of source sequence

Contigs categorized by size

Clones, markers, genes, variation annotated on the sequence (by chromosome)

maps based on the sequence assembly

Chr	Clone	Contig	GScan	GenBank	Genes	STS	UniGene	Variation
1	1128	203	4534	2909	1785	10339	15701	133122
2	408	324	3647	2024	1080	7092	12973	102734
3	322	340	2841	1922	929	6204	10410	94679
4	276	332	2236	1715	659	6790	7763	80299
5	250	260	2547	2222	828	5741	8977	112815
6	839	148	3032	2321	984	6321	9878	93225
7	297	163	2700	1622	830	6802	9476	76627
8	225	220	2112	1488	588	4221	6960	54677
9	340	88	2114	1197	680	3968	7099	59991
10	407	109	2477	1467	652	4675	8066	62250
11	352	141	2937	1933	984	5884	8423	89680
12	258	168	2201	1397	932	5526	8641	63162
13	264	103	1394	1068	319	2926	4478	53563
14	197	37	1598	828	560	4446	5758	46656
15	202	96	1574	859	544	3089	5852	38320
16	236	104	1907	849	717	3041	5854	44082
17	118	124	2234	807	994	3790	7620	36087
18	84	111	1168	1004	286	2237	3490	46019
19	53	130	2416	840	1164	2636	6514	26755
20	309	10	1313	629	489	2822	4204	30544
21	72	5	610	103	204	1728	2164	22864
22	312	11	1156	524	454	1980	3549	27309
X	892	225	1885	1601	698	5018	4529	32281
Y	30	18	317	251	101	469	316	1104
Un	2	69	110	80	12	110	186	2669
Total	7873	3539	51060	31660	17473	107855	168881	1431514

Maps in non-sequence coordinates (genetic, cytogenetic, physical)

Genetic

maps in cytogenetic coordinates

Chr	FISH_Clones	Genes	Mitelman	Morbid
1	1411	1704	992	184
2	501	1064	254	119
3	417	914	547	103
4	352	635	145	68
5	383	747	594	80
6	915	976	582	92
7	334	889	591	80
8	264	553	330	61
9	404	675	500	74
10	462	591	193	71
11	465	1136	664	123
12	312	875	453	84
13	287	285	323	37
14	228	777	349	49
15	227	523	151	57
16	284	731	236	73
17	160	999	391	104
18	109	246	144	31
19	78	1133	214	88
20	443	457	155	29
21	109	237	153	23
22	370	518	321	40
X	946	822	91	197
Y	18	75	7	4
Un	-	-	-	-
Total	9479	17562	8380	1871

physical maps

Chr	GM99_G3	GM99_GB4	NCBI_RH	Stanford_G3	TNG	WI_RH	WI_YAC
1	661	5351	2433	551	4404	1363	913
2	586	3191	1615	515	2978	1177	948
3	527	3063	1573	501	3110	1057	815
4	494	2088	1398	709	4281	759	726
5	283	2299	1189	350	2128	805	657
6	422	3156	1594	407	2002	831	632
7	461	2249	1094	419	1678	799	568
8	276	1797	979	276	1759	631	566
9	266	1795	852	271	1387	632	402
10	371	2053	1194	358	1656	700	517
11	385	2606	1315	411	1613	819	501
12	323	2412	1286	326	1520	758	495
13	156	1032	591	162	1002	364	312
14	276	1616	905	260	1063	512	345
15	214	1563	790	191	1038	504	301
16	192	1284	683	210	1099	441	254
17	265	1847	929	230	915	456	239
18	163	789	487	177	868	334	311
19	200	1672	722	182	468	374	80
20	167	1317	720	159	552	354	270
21	88	442	338	156	972	143	112
22	109	789	337	112	277	269	141
X	176	1347	703	179	492	492	367
Y	-	-	-	73	114	-	-
Un	-	-	-	-	-	-	-
Total	7061	45758	23727	7185	37376	14574	10472

Last updated July 20, 2001

Questions or Comments?
Write to the Help Desk

NCBI | NLM | NIH | Top of page