Zebra Finch Genome Resources

NCBI Web Resources:
Global Query. Query all NCBI Entrez databases in one step.
BLAST. Compare your sequence to different organism-specific sequences.
dbSNP. Database of SNPs and other genetic variation.
e-PCR. Check your sequence
for STSs and view in genomic context.
GEO. Gene Expression Omnibus, a public repository for expression data.
HomoloGene. Putative homologies among human, mouse, rat, and zebrafish.
PopSet.Population study data sets.
PubMed Central. Digital archive of full text and content from life science journals.
RefSeq. Reference sequences of genomic contigs, mRNAs, and proteins.
Taxonomy. Taxonomy Browser hosts summaries of sequence resources and external links through NCBI's LinkOut.
Trace Archive. Collection of raw sequence traces from various sequencing projects.
UniGene. Organization of transcribed sequences into gene-based clusters.
UniSTS. A non-redundant collection of STSs with links to maps and sequence.

FTP Sites:
RefSeq
UniGene
Map Viewer

Welcome to the Taeniopygia guttata Genome Resources page. This homepage provides information on zebra finch- and avian-related resources from NCBI and the zebra finch research community. If you have questions about any of the resources or have a resource to add please let us know. We encourage your suggestions.

[Taeniopygia guttata (zebra finch)]

The zebra finch (Taeniopygia guttata), a small songbird native to Australia and islands in the South Pacific, has a long history in aviculture. Zebra finches are sexually dimorphic, with the sexes exhibiting differences in behavior and appearance. This bird with a 'singing genome' serves as a model for research into the role genes play in brain development, learning, and behavior.

Photo courtesy of Graeme Chapman.

Just In...

Release of chicken build 2.1 in Map Viewer: This build represents an improvement to the initial 6.6X chicken assembly. Map displays include alignment of zebra finch UniGene clusters and mRNAs as well as mRNAs from avian species other than chicken and zebra finch. A link to the FTP site for the chicken Map Viewer files is also provided on this page.

Recent meetings...

The 2007 International Chick Meeting was held in Barcelona, Spain at the Universitat Pompeu Fabra from Wednesday through Saturday, April 11- 14.

Please go to the meeting website for more information.


New This Month In:
Gene
CoreNucleotide
Protein
PubMed
PubMed Central


White Papers:
Construction of a zebra finch BAC library
Physical map of the zebra finch genome
Whole genome sequencing of zebra finch

Maps and Sequence:
BLAST Zebra finch Sequences
Taeniopygia guttata Traces

Sequence Resources
AvianNET
ESTIMA: Songbird EST Database
Genome Sequencing Center - Washington University in St. Louis
Songbird Brain Transcriptome Database
Songbirdgenome.org
Songbird Neurogenomics Initiative

Other Resources:
Art Arnold Laboratory
The Clayton Lab at Illinois
eFinch.com
Keck Center for Integrative Neuroscience
National Finch and Softbill Society
NetVet
Online Mendelian Inheritance in Animals (OMIA)
Society for Behavioral Neuroendocrinology
The Zebra Finch Page
Zebra Finches
Zebra Finch Society - USA


Documentation:
Genome Glossary