Aspergillus Genome Resources

NCBI Web Resources:
Global Query. Query all NCBI Entrez databases in one step.
BLAST. Compare your sequence to A. clavatus-, A. fumigatus-, A. niger-, or other fungi-specific sequences.
Entrez Gene. Focal point for genes and associated information.
Fungal Genomes Central. Portal to information and resources pertaining to fungi and fungal sequencing projects.
GeneRIF. Provides a simple mechanism for scientists to enrich the functional annotation of genes in Entrez Gene.
Genome Project. Complete and in-progress large-scale sequencing, assembly, annotation and mapping projects.
GEO. Gene Expression Omnibus, a public repository for expression data.
Map Viewer. Interactive viewer for genome maps, sequence, and genes.
PopSet. Population study data sets.
PubMed Central. Digital archive of full text and content from life science journals.
RefSeq. Reference sequences of genomic contigs, mRNAs, and proteins.
Taxonomy. Taxonomy Browser hosts summaries of sequence resources and external links through NCBI's LinkOut.
TaxPlot. Tool for three-way genome comparisons based on the sequences of the encoded proteins.
Trace Archive. Collection of raw sequence traces from various sequencing projects.

FTP Sites:
Gene
Genomes
RefSeq
WGS Sequence

 Welcome to the Aspergillus Genome Resources guide. This gateway page will bring together information on Aspergillus-related resources from NCBI and the Aspergillus research community. We encourage your suggestions.


Aspergillus
Photo courtesy of Robert A. Samson

Aspergillus is a large genus of filamentous fungi that encompasses many species of medical, agricultural, industrial, and scientific importance.


ANNOUNCING the release of the Aspergillus clavatus NRRL 1 genome assembly and annotation (build 1.1) in Map Viewer. Take a moment to BLAST your favorite gene sequence against the genome and explore the maps available for viewing.
Additional Aspergillus genomes available for viewing in Map Viewer include the Aspergillus fumigatus Af293 genome assembly (build 2.1) and the Aspergillus niger CBS 513.88 genome assembly (build 1.1).

New This Month In:
  • Gene
  • CoreNucleotide
  • Protein
  • PubMed

    • Upcoming Meetings:

    The 5th International Aspergillus Meeting
    Edinburgh, Scotland
    April 4-5, 2008

    9th European Conference on Fungal Genetics (ECFG9)
    Edinburgh, Scotland
    April 5-8, 2008

    XII International Congress of Mycology
    Istanbul, Turkey
    August 5-9, 2008


    Jump to the Aspergillus clavatus Genome!
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    Jump to the Aspergillus fumigatus Genome!
    Chromosome: 


    Jump to the Aspergillus niger Genome!
    Chromosome: 


    Sequence, Annotation, and Map Resources:
    Aspergillus clavatus:
  • A. clavatus WGS Sequence (AAKD)
    • Aspergillus (Neosartorya) fischeri:
  • A. fischeri WGS Sequence (AAKE)
    • Aspergillus flavus:
  • A. flavus WGS Sequence (AAIH)
  • aspergillusflavus.org at CIFR, NCSU
  • DFCI A. flavus Gene Index
    • Aspergillus fumigatus:
  • A. fumigatus WGS Sequence (AAHF)
  • A. fumigatus WGS Sequence (ABDB)
  • A. fumigatus Genome Database at TIGR
  • A. fumigatus GeneDB
    • Aspergillus (Emericella) nidulans:
  • A. nidulans WGS Sequence (AACD)
  • A. nidulans Database at the Broad Institute
  • A. nidulans Linkage Map
  • A. nidulans Physical Map
  • DFCI A. nidulans Gene Index
    • Aspergillus niger:
  • A. niger Scaffolds
  • A. niger Database at the DOE-JGI
    • Aspergillus oryzae:
  • A. oryzae Genome Sequence
  • A. oryzae Database at NITE
    • Aspergillus terreus:
  • A. terreus WGS Sequence (AABT)
  • A. terreus WGS Sequence (AAJN)
  • A. terreus Database at the Broad Institute
    • Multiple Aspergilli Species:
  • Aspergillus Cosmid and cDNA Sequencing

    • Community Resources:
  • Aspergillus Website
  • Fungal Genetics Stock Center (FGSC)
  • Aspergillus Strain Database
  • Central Aspergillus Data Repository (CADRE)
  • aspergillus-genomics.org
  • Aspergillus Comparative Database
  • Fungal Genome Initiative (FGI)
  • Tom Volk's Fungi: Aspergillus
  • Doctor Fungus: Aspergillus spp.
  • MedlinePlus: Aspergillosis

    • Documentation:
  • FGI First White Paper
  • FGI Second White Paper
  • FGI Third White Paper
  • FGI Fourth White Paper
  • Glossary of Genome Terms

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