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Cytogenetic Resource of FISH-mapped, Sequence-tagged Clones

FISH chr: FISH data source:
Clone distributor:
Sequence tag: Show details on sequence-tag:
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Chr clone name Distributor1 FISH Placement on genome2 Placement summary3 Insert sequence4 STS4 BAC-ends4 Flag
20 RP11-107L14 C 20p13(FHCRC)
chr20 2Mb   AFM333XE5 AQ316350.1 SP6,
AQ316353.1 T7
20 RP11-147L21 CR 20p13(FHCRC)
chr20 0Mb AC040953.2 T98414, AFM077XD3, AFM077XD3*u CL423326.1 T7,
CL423321.1 SP6,
AQ373834.1*u SP6
20 RP11-153M12 C 20p13(FHCRC)
chr20 0Mb   AFMA131WF1 AQ387838.1 T7,
AQ387835.1 SP6
20 RP11-238D15 20p13(FHCRC)
        AZ521078.1*u T7  
20 RP11-24E15 C 20p13(FHCRC)
chr20 0Mb   AFM077XD3, AFM077XD3*u B89327.1 SP6,
B86599.1 SP6
20 RP11-26F18 C 20p13(FHCRC)
chr20 3Mb AC016217.2 AFM240ZF4, AFM240ZF4*u B86854.1 T7,
B86853.1 SP6
20 RP11-466J8 C 20p13(FHCRC)
chr20 2Mb AL138803.3   AQ637559.1 T7,
AQ637557.1*u SP6
20 RP11-77C3 C 20p13(FHCRC)
chr20 1Mb AL138804.16   AQ268055.1 T7,
AQ268051.1 SP6
20 RP11-78P4 C 20p13(FHCRC)
chr20 1Mb   AFM240WB8, AFM240WB8*u AQ281462.1 SP6  
20 RP11-91I9 C 20p13(FHCRC)
chr20 2Mb     AQ281444.1 SP6,
AQ281451.1 T7
20 RP11-235C20 CR 20p12.3c(NCI)
chr20 5Mb   AFMB352XD9 CL423224.1 T7,
CL423219.1 SP6
20 RP11-26H9 C 20p12.3~13(FHCRC)
chr20 6Mb   AFMA196WF5 B84573.1 T7  
20 CTD-2060J19 C 20p12(UCSF)
chr20 0Mb     AQ243342.1 SP6,
AQ245742.1 T7
20 CTD-2163H11 C 20p12(UCSF)
chr20 1Mb     AQ085975.1 SP6,
AQ125138.1 T7,
AQ899360.1 T7,
20 CTD-2285J6 C 20p12(UCSF)
chr20 4Mb     AQ009591.1 SP6,
20 RP11-149O7 C 20p12~13(FHCRC)
chr20 5Mb   AFMB290WH5 AQ377577.1 T7,
AQ377575.1*u SP6
20 RP11-314N13 R 20p13e(NCI)
chr20 1Mb AL136531.16   AQ503754.1 T7,
AQ503753.1 SP6
20 RP11-737G10 R 20p13b(NCI)
chr20 3Mb AC023420.4   AQ455994.1 T7,
AQ450629.1 SP6
20 RP11-48M7 CR 20p12(FHCRC)
chr20 3Mb   AFM234TF10 AQ198009.1 ,
CL423352.1 T7,
CL423351.1 SP6,
20 RP11-24K4 CR 20p12.2b(NCI)
chr20 9Mb   AFMA086WE9 AQ014010.1 ,
B84457.1 SP6,
B88778.1 T7
20 CTD-2003O22 R 20p12(UCSF)
chr20 0Mb     AQ224309.1 SP6  
20 CTD-2009P15 R 20p12(UCSF)
chr20 2Mb     B81121.1 ,
AQ225011.1 T7,
B57548.1 SP6
20 CTD-2013D15 C 20p12(FHCRC)
chr20 10Mb     AQ221679.1 SP6,
AQ223387.1*u T7
20 CTD-2042G11 R 20p12(UCSF)
chr4 120Mb     B80055.1 ,
B80056.1 SP6
20 CTD-2042G9 R 20p12(UCSF)
chr2 152Mb     B79494.1 SP6,
20 CTD-2072L21 R 20p12(UCSF)
chr20 18Mb     AQ901429.1 T7  
20 RP11-103H2 C 20p12(FHCRC)
chr20 9Mb   AFM234ZB12, AFM234ZB12*u AQ314678.1 SP6,
AQ314680.1 T7
20 RP11-1056I10 C 20p12(FHCRC)
chr20 10Mb     AQ662726.1 T7,
AQ662878.1 SP6
20 RP11-11O15 C 20p12(FHCRC)
chr20 15Mb   AFM291WE5 B73205.1 T7,
B73204.1 SP6
20 RP11-238I2 C 20p12(FHCRC)
chr20 13Mb   AFM211YB8 AZ520880.1 T7  
20 RP11-60N17 C 20p12(FHCRC)
chr20 11Mb   AFM292XB5 AQ202451.1 ,
20 RP11-79E16 C 20p12(FHCRC)
chr20 8Mb     AQ629590.1 T7,
AQ282617.1 T7,
AZ519159.1 SP6,
AQ282614.1 SP6
20 RP11-79F17 C 20p12(FHCRC)
chr20 19Mb     AQ284174.1 SP6,
AQ284176.1 T7
20 RP11-89F13 C 20p12(FHCRC)
chr20 14Mb     AQ284679.1 T7,
AQ284678.1 SP6
20 RP11-90E23 CR 20p12(FHCRC)
chr20 11Mb   AFM292XB5 AQ281557.1 SP6,
AQ281560.1 T7
20 RP11-91I2 C 20p12(FHCRC)
chr20 9Mb     AQ282447.1 SP6,
AQ282450.1 T7
20 RP11-91O7 C 20p12(FHCRC)
chr20 10Mb   AFM292XB5, AFM291WE5*u AQ282510.1 SP6,
AQ282514.1 T7
20 RP11-110C10 C 20p11.2~12(FHCRC)
chr20 18Mb AL389897.4 AFMA337ZH9 AQ323522.1 T7,
AQ350111.1 SP6
20 RP11-11M17 CR 20p11.2~12(FHCRC)
chr20 17Mb AC013628.2 AFM242YF8, AFM242YF8*u B73188.1 SP6,
B73189.1 T7
20 RP11-134G22 C 20p11.2~12(FHCRC)
chr20 15Mb   AFMC013XE5 AQ344412.1 SP6  
20 RP11-19D2 R 20p12.3a(NCI)
chr20 7Mb AL080248.7   B92163.1 SP6,
B81947.1 T7
20 RP11-16N16 C 20p12.1(FHCRC)
chr20 16Mb   AFM260XG5, AFM260XG5*u B85418.1 SP6,
B82562.1 T7
20 RP11-451O20 C 20p12.1(FHCRC)
chr20 13Mb     AQ584163.1 T7  
20 RP11-51O4 CR 20p12.1(FHCRC)
chr20 15Mb   AFM044XB4, AFM291WE5, AFM044XB4*u, AFM044XB4*u CL423282.1 SP6,
AQ053674.1 ,
CL423286.1 T7,
20 RP11-65G18 C 20p12.1(FHCRC)
chr20 15Mb   AFMA224XF1 AQ200787.1  
20 RP11-88P14 C 20p12.1(FHCRC)
chr20 12Mb     AZ516923.1 T7,
AQ281628.1 SP6
20 RP11-157E14 R 20p12.1d(NCI)
chr20 12Mb AL133331.27   AQ372757.1 SP6,
AQ372761.1 T7
20 RP11-54N6 R 20p12.1c(NCI)
chr20 14Mb AL355133.8   AQ082802.1 ,
CL423252.1 SP6,
CL423255.1 T7,
20 RP11-451O14 C 20p11.2(FHCRC)
chr20 23Mb     AQ584147.1 T7,
AQ584144.1 SP6
20 RP11-58B10 CR 20p11.2(FHCRC)
chr20 24Mb   AFMA191XC1 AQ201224.1 ,
CL423349.1 T7,
CL423346.1 SP6,
20 RP11-77C2 C 20p11.2(FHCRC)
chr20 23Mb   AFM248XB9, AFM248XB9*u AQ286108.1*u T7  
20 RP11-80N12 C 20p11.2(FHCRC)
chr20 16Mb     AQ317837.1 SP6,
AQ284189.1 T7
20 RP11-89H18 C 20p11.2(FHCRC)
chr20 22Mb     AZ517865.1 T7,
AQ285923.1 T7,
AQ285920.1*u SP6
20 RP11-89J18 C 20p11.2(FHCRC)
chr20 23Mb     AQ286561.1 T7,
AQ286559.1*u SP6
20 RP11-90H19 C 20p11.2(FHCRC)
chr20 25Mb     AZ518496.1 T7,
AQ284319.1 T7,
AQ284311.1 SP6
20 RP11-91G1 C 20p11.2(FHCRC)
chr20 20Mb     AQ281342.1 SP6,
AQ281345.1 T7
20 RP11-91M17 C 20p11.2(FHCRC)
chr20 19Mb     AQ282285.1 SP6,
AQ282287.1 T7
20 RP11-32N12 C 20p11.1~11.2(FHCRC)
chr20 24Mb   AFMA210WH9 AQ045416.1  
20 RP11-97N19 R 20p11.23b(NCI)
chr20 18Mb AL136090.12   AQ319526.1 T7,
AQ319525.1 SP6
20 RP11-470C13 R 20p11.23a~11.22b(NCI)
chr20 20Mb AL161658.21 RH12147 AZ694839.1 T7,
CL423319.1 T7
20 RP11-7F10 C 20p11.22(FHCRC)
chr20 21Mb   AFMB027ZB9 B72018.1 SP6,
B72019.1 T7
20 RP11-79K14 C 20p11.1(FHCRC)
chr20 24Mb     AQ283189.1 T7,
AQ629667.1 T7,
AZ519185.1 SP6,
AQ283179.1 SP6
20 RP11-421D23 S 20cen(SC)
        AQ551992.1*u SP6,
AQ551994.1*u T7
20 CTD-2060H18 C 20q11.1(FHCRC)
chr20 31Mb     AQ244199.1 T7,
B70695.1 ,
B70696.1 SP6,
AQ247391.1*u SP6
20 CTD-2182L9 S 20q11.1~11.23(SC)
chr20 34Mb AL390374.16 stbA2182L9A AQ023121.1 T7,
AQ024779.1 SP6
20 RP11-353C18 S 20q11.1~11.23(SC)
chr20 33Mb AL357374.11   AQ533081.1 T7  
20 RP11-381P2 RS 20q11.1~11.23(SC)
chr20 33Mb AL356422.12   CL423292.1 T7,
CL423287.1 SP6,
AQ532467.1*u SP6
20 RP11-382A12 RS 20q11.1~11.23(SC)
chr20 34Mb AL365505.15   AQ547630.1*d SP6,
AQ547632.1*d T7
20 RP11-382A12 RS 20q11.1~11.23(SC)
chr1 245Mb AL365505.15*d   AQ547632.1 T7,
AQ547630.1 SP6
20 RP11-1147I19 R 20q11.21a(NCI)
chr20 29Mb AL359765.6   AQ698668.1 SP6,
AQ708250.1 T7
20 RP11-134I8 C 20q11.2(FHCRC)
      AFMA339XF5*u, AFMB054ZH9*u AQ344420.1*u SP6,
AQ386884.1*u T7
20 RP11-160I20 C 20q11.2(FHCRC)
chr20 32Mb   AFM123YF8, AFM123YF8*u AQ376160.1 T7  
20 RP11-263P6 C 20q11.2(FHCRC)
chr20 32Mb AL137253.8   AQ484078.1 SP6,
AQ484081.1 T7
20 RP11-298O1 C 20q11.2(FHCRC)
chr20 34Mb     AQ507400.1 SP6,
AQ507403.1 T7
20 RP11-318N1 RS 20q11.21~11.23(SC)
chr20 32Mb   stdJ791H18T7 AQ536609.1 SP6,
AQ536610.1 T7
20 RP11-42O4 C 20q11.2(FHCRC)
chr20 33Mb AL356652.19   AQ046645.1 ,
20 RP11-47O20 C 20q11.2(FHCRC)
chr20 30Mb   AFMA141XD9, AFM262XF9 AQ199707.1  
20 RP11-607H21 C 20q11.2(FHCRC)
chr20 31Mb AC023227.3   AQ360805.1 T7  
20 RP11-91I21 C 20q11.2(FHCRC)
chr20 31Mb     AQ281488.1 SP6  
20 RP11-138A15 C 20q11.2~12(FHCRC)
chr20 35Mb   AFMA163XH1 AQ382793.1 SP6  
20 RP11-71N16 C 20q11.2~12(FHCRC)
chr20 37Mb   AFM224YC1 AQ266290.1 SP6  
20 RP11-94H15 R 20q11.21c(NCI)
chr20 31Mb AC023015.2   AQ282137.1 SP6,
AQ315878.1 T7
20 RP11-451G10 C 20q11.22(FHCRC)
chr20 35Mb     AQ583252.1 SP6,
AQ583256.1 T7
20 CTD-2202H1 S 20q11.22~12(SC)
chr20 36Mb   stbA2202H1A AQ338610.1 SP6,
AQ032598.1 T7
20 RP11-122O1 R 20q11.23c(NCI)
chr20 36Mb AL133519.28   AQ342907.1 SP6,
AQ342910.1 T7
20 CTD-2001I14 R 20q12(UCSF)
        AQ779437.1*u SP6,
AQ783843.1*u T7
20 CTD-2010K12 R 20q12(UCSF)
chr20 29Mb     AQ226647.1 SP6  
20 CTD-2019H1 R 20q12(UCSF)
chr20 43Mb     AQ772930.1 SP6,
AQ772734.1*u T7
20 CTD-2061E8 R 20q12(UCSF)
chr20 31Mb     AQ244851.1 T7,
AQ899715.1 T7,
AQ247672.1 SP6
20 CTD-2174G23 R 20q12(UCSF)
chr20 34Mb     B89021.1 SP6  
20 CTD-2200D10 R 20q12(UCSF)
        AQ065041.1*u T7,
AQ088978.1*u T7
20 CTD-2232D15 R 20q12(UCSF)
chr20 41Mb     AQ071530.1 T7,
AQ299722.1*u SP6
20 CTD-2258K15 C 20q12(UCSF)
        AQ011725.1*u T7  
20 CTD-2264C5 R 20q12(UCSF)
        AQ010393.1*u SP6,
AQ065229.1*u T7
20 RP11-109C3 C 20q12(FHCRC)
chr20 45Mb   AFM326XD5, AFM326XD5*u AQ320113.1 T7,
AQ353858.1*u SP6
20 RP11-111H12 C 20q12(FHCRC)
chr20 39Mb   AFM051XF12, AFM051XF12*u AQ342025.1 T7,
AQ319794.1*u SP6
20 RP11-13F12 C 20q12(FHCRC)
chr20 40Mb   AFMA285WF1 B76027.1 T7  
20 RP11-169A6 C 20q12(FHCRC)
chr20 43Mb AC026018.1 AFM273YH9, T94961, AFM273YH9*u AQ422762.1 SP6  
20 RP11-17F3 CR 20q12(FHCRC)
chr20 40Mb   AFM163YH8, AFM163YH8*u B85443.1 T7,
AZ515860.1 SP6
20 RP11-29H19 C 20q12(FHCRC)
chr20 42Mb   AFM189YA7 B87579.1 T7  
Chr clone name Distributor1 FISH Placement on genome2 Placement summary3 Insert sequence4 STS4 BAC-ends4 Flag
20 RP11-4A12 C 20q12(FHCRC)
chr20 41Mb   AFMC013YH9 B48914.1 SP6  
20 RP11-69I10 C 20q12(FHCRC)
chr20 41Mb   AFM029YC3, AFM029YC3*u, AFM029YC3*u AQ237359.1 T7,
AQ237356.1 SP6
20 RP11-79G10 C 20q12(FHCRC)
chr20 38Mb     AQ282661.1 SP6,
AZ519167.1 SP6,
AQ581361.1 SP6,
AQ581363.1 T7,
AQ282662.1 T7
20 RP11-93L19 C 20q12(FHCRC)
chr20 39Mb     AQ323749.1 T7  
20 RP11-9M24 CR 20q12(FHCRC)
chr20 38Mb   AFM142XH4, AFM142XH4*u CL423320.1 SP6,
CL423325.1*u T7
20 RP11-30F23 CR 20q12(FHCRC)
chr20 42Mb   AFMA060WG1 B87770.1 SP6,
B87771.1 T7
20 CTD-2220O2 C 20q12(UCSF)
        AQ152215.1*u T7  
20 RP11-75C17 C 20q12~13.1(FHCRC)
chr20 44Mb   AFMA132XE9 AQ266365.1 SP6,
AQ239123.1 T7
20 RP11-79K5 20q12~13.1(FHCRC)
chr20 43Mb     AQ317573.1 SP6,
AQ283744.1 T7,
AZ519077.1*u SP6
20 CTD-2238P18 C 20q12(FHCRC)
chr20 45Mb     AQ065701.1 T7,
AQ067648.1 SP6
20 RP11-151A11 R 20q13.11a(NCI)
chr20 41Mb AL359695.6 AFMC013YH9 AQ376230.1 SP6,
AQ376253.1 T7
20 RP11-124D1 C 20q13.1(FHCRC)
chr20 46Mb   AFM238VH6, AFMB017XG5 AQ343418.1 SP6,
AQ343420.1 T7
20 RP11-344G20 C 20q13.1(FHCRC)
chr20 43Mb AC067737.11   AQ541060.1 SP6,
AQ541065.1*u T7
20 RP11-465L10 C 20q13.1(FHCRC)
chr20 43Mb AL162458.10   AQ582058.1 T7,
AQ582057.1 SP6
20 RP11-51K19 C 20q13.1(FHCRC)
chr20 46Mb   AFM238VH6, AFMB017XG5 AQ052656.1  
20 RP11-5P14 CR 20q13.1(FHCRC)
chr20 48Mb   AFM205TC9 B69678.1 T7,
B49327.1 T7,
AZ517073.1 SP6
20 RP11-89L20 C 20q13.1(FHCRC)
        AQ286613.1*u SP6  
20 RP11-10D18 CR 20q13.1~13.2(FHCRC)
chr20 49Mb   AFMA192WB1 AZ520201.1 T7,
B72760.1 SP6
20 RP11-24K24 C 20q13.1~13.2(FHCRC)
chr20 49Mb   AFMA244YE9 B86697.1 SP6  
20 RP11-451C16 C 20q13.1~13.2(FHCRC)
chr20 48Mb     AQ583098.1 SP6  
20 RP11-72F10 C 20q13.1~13.2(FHCRC)
chr20 48Mb   AFM165XH2, AFM165XH2*u AQ266384.1 SP6  
20 CTD-2007A7 S 20q13.11~13.31(SC)
chr20 44Mb AL359506.8   AQ217798.1 SP6,
B52811.1 SP6,
AQ269317.1 T7,
20 RP11-323C15 S 20q13.11~13.31(SC)
chr20 44Mb AL354766.17   AQ537831.1 T7,
AQ537828.1 SP6
20 CTD-2104F9 R 20q13(UCSF)
chr20 37Mb     AQ566879.1 SP6,
AQ566705.1 T7
20 RP11-314A4 R 20q13.12c~13.13c(NCI)
chr20 45Mb AL359434.15   AQ506983.1 T7,
AQ506981.1 SP6
20 CTD-2004D12 R 20q13.2(UCSF)
chr20 42Mb     AQ221394.1 T7,
AQ220999.1 SP6
20 CTD-2022N11 R 20q13.2(UCSF)
chr20 59Mb     AQ228694.1 T7,
B65705.1 SP6,
AQ228826.1 SP6
20 CTD-2148H4 R 20q13.2(UCSF)
chr20 55Mb     AQ776648.1 T7,
AQ676990.1*u SP6
20 CTD-2196B23 R 20q13.2(UCSF)
chr20 56Mb     AQ177305.1 T7,
AQ253991.1 SP6
20 CTD-2200K24 R 20q13.2(UCSF)
chr20 42Mb     AQ117063.1 T7  
20 CTD-2276M21 R 20q13.2(UCSF)
chr20 56Mb     AQ746248.1 SP6,
AQ745407.1 T7
20 RP11-15M15 C 20q13.2(FHCRC)
chr20 51Mb AL391097.13 AFMC028ZC5 B83554.1 T7,
B76563.1 SP6
20 RP11-172C21 CR 20q13.2(FHCRC)
chr20 53Mb   AFMA225WE9, AFMA114YA5 CL423191.1 T7,
CL423190.1 SP6
20 RP11-195N11 C 20q13.2(FHCRC)
chr20 53Mb AL158015.9 AFMA225WE9 AQ412168.1 T7  
20 RP11-451E24 C 20q13.2(FHCRC)
chr20 50Mb     AQ583212.1 SP6,
AQ583216.1 T7
20 RP11-55E1 C 20q13.2(FHCRC)
chr20 51Mb   AFMA072ZB9 AQ081624.1 T7,
20 RP11-65K20 C 20q13.2(FHCRC)
chr20 54Mb AL359534.10   AQ200861.1 ,
AQ241140.1 SP6
20 RP11-91L1 C 20q13.2(FHCRC)
chr20 51Mb     AZ519337.1 T7,
AQ318760.1 T7,
AQ283579.1 SP6
20 RP11-157P1 C 20q13.2~13.3(FHCRC)
chr20 60Mb AL354836.13 AA459519 AQ374247.1 SP6  
20 RP11-1E23 C 20q13.2~13.3(FHCRC)
chr20 57Mb AC015739.2*u AFM046XF6 B49581.1 T7,
AQ312655.1 SP6
20 RP11-344C10 RS 20q13.2~13.33(SC)
chr20 56Mb   stdJ646G2SP6 AQ540379.1 SP6,
AQ540381.1 T7
20 RP11-93B14 S 20q13.2~13.33(SC)
chr20 60Mb AL357033.19   AQ312036.1 T7,
AQ312034.1 SP6
20 RP11-1F20 R 20q13.2c(NCI)
chr20 52Mb AC015742.3   B63548.1 T7,
AQ280999.1 SP6
20 RP11-46O3 R 20q13.31a(NCI)
chr20 54Mb AL161657.22   AQ199652.1 ,
CL423218.1 SP6,
CL423223.1 T7,
20 RP11-266K16 C 20q13.3(FHCRC)
chr20 62Mb     AQ490833.1 T7,
AQ490829.1 SP6
20 RP11-80P6 C 20q13.3(FHCRC)
chr20 56Mb     AQ317846.1 SP6  
20 RP11-94A18 C 20q13.3(FHCRC)
chr20 58Mb   AFM218XE7, AFM218XE7*u AQ314311.1 SP6,
AQ314314.1 T7
20 RP11-164D18 R 20q13.32b(NCI)
chr20 57Mb AL389889.11   AQ380608.1 SP6,
AQ380612.1 T7
20 RP11-723K16 R 20q13.33a(NCI)
chr20 59Mb AL365229.13   CL423251.1 SP6,
CL423254.1 T7,
AQ437220.1 T7
total148C:99 R:54 S:11148139 4062148 

1 Distributor: C, Children's hospical Oakland research institute; R, Research Genetics; S, Sanger Center

2 Placement of clones on the genome. Only clones that are localiized to one or two places on the same chromosome on the draft sequence are included

3 Placement summary indicates sequences used for clone placement.
   BAC-end sequence aligned in the plus orientation
   BAC-end sequence aligned in the minus orientation
   insert sequence
   STS aligned
   insert sequence has clone end information.

4 Sequence-tag

  *d indicates sequences that disagree with placement on the genome.

  *u indicates seqeunces that didn't align to the genome or were not used for annotation because the clone was placed to multiple locations on the human genome.