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    LOC123430179 cysteine proteinase inhibitor 10-like [ Hordeum vulgare subsp. vulgare (domesticated barley) ]

    Gene ID: 123430179, updated on 30-Nov-2023

    Summary

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    Gene symbol
    LOC123430179
    Gene description
    cysteine proteinase inhibitor 10-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Hordeum vulgare subsp. vulgare (sub-species: vulgare)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Hordeum
    Also known as
    icy9
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    Genomic context

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    Location:
    chromosome: 2H
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    100 current MorexV3_pseudomolecules_assembly (GCF_904849725.1) 2H NC_058519.1 (415532792..415533513)

    Chromosome 2H - NC_058519.1Genomic Context describing neighboring genes Neighboring gene probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC Neighboring gene chlorophyll a-b binding protein CP24 10A, chloroplastic-like Neighboring gene exocyst complex component EXO70H1-like Neighboring gene 40S ribosomal protein S8

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_058519.1 Chromosome 2H Reference MorexV3_pseudomolecules_assembly Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of the entire cystatin gene family in barley and their target cathepsin L-like cysteine-proteases, partners in the hordein mobilization during seed germination. Martinez M, et al. Plant Physiol, 2009 Nov. PMID 19759340, Free PMC Article
    2. Comprehensive sequence analysis of 24,783 barley full-length cDNAs derived from 12 clone libraries. Matsumoto T, et al. Plant Physiol, 2011 May. PMID 21415278, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cysteine-type endopeptidase inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cysteine proteinase inhibitor 10-like
    Names
    cystatin Hv-CPI9
    predicted protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Hordeum vulgare subsp. vulgare Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference MorexV3_pseudomolecules_assembly Primary Assembly

    Genomic

    1. NC_058519.1 Reference MorexV3_pseudomolecules_assembly Primary Assembly

      Range
      415532792..415533513
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_045114072.1 → XP_044970007.1  cysteine proteinase inhibitor 10-like

      UniProtKB/TrEMBL
      F2D9M6, Q1ENF4
      Conserved Domains (1) summary
      cl09238
      Location:44 → 140
      CY; Cystatin-like domain; Cystatins are a family of cysteine protease inhibitors that occur mainly as single domain proteins. However some extracellular proteins such as kininogen, His-rich glycoprotein and fetuin also contain these domains.
    Nucleotide Protein
    Heading Accession and Version

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