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    Sap-r Saposin-related [ Tribolium castaneum (red flour beetle) ]

    Gene ID: 657852, updated on 12-Apr-2024

    Summary

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    Gene symbol
    Sap-r
    Gene description
    Saposin-related
    Locus tag
    TcasGA2_TC000449
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tribolium castaneum
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 4 NC_087397.1 (4047979..4052566)
    103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG2 NC_007417.3 (11135363..11139949, complement)

    Chromosome 4 - NC_087397.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107398975 Neighboring gene transfer RNA valine (anticodon AAC) Neighboring gene nucleoside diphosphate kinase homolog 5 Neighboring gene uncharacterized LOC135265926 Neighboring gene javelin-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum. Kim HS, et al. Nucleic Acids Res, 2010 Jan. PMID 19820115, Free PMC Article
    2. The genome of the model beetle and pest Tribolium castaneum. Tribolium Genome Sequencing Consortium, et al. Nature, 2008 Apr 24. PMID 18362917

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in sphingolipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in lysosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    prosaposin
    Names
    AUGUSTUS-3.0.2_00449
    GLEAN_00449
    Prosaposin-like Protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference icTriCast1.1 Primary Assembly

    Genomic

    1. NC_087397.1 Reference icTriCast1.1 Primary Assembly

      Range
      4047979..4052566
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_961759.5 → XP_966852.1  prosaposin

      See identical proteins and their annotated locations for XP_966852.1

      UniProtKB/TrEMBL
      D6WA77
      Conserved Domains (5) summary
      smart00162
      Location:32 → 64
      SAPA; Saposin/surfactant protein-B A-type DOMAIN
      smart00741
      Location:625 → 698
      SapB; Saposin (B) Domains
      pfam02199
      Location:801 → 832
      SapA; Saposin A-type domain
      pfam03489
      Location:120 → 151
      SapB_2; Saposin-like type B, region 2
      pfam05184
      Location:625 → 659
      SapB_1; Saposin-like type B, region 1
    Nucleotide Protein Strain
    Heading Accession and Version

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