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    LOC100117183 protein roadkill [ Nasonia vitripennis (jewel wasp) ]

    Gene ID: 100117183, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC100117183
    Gene description
    protein roadkill
    See related
    NASONIABASE:NV15499
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Nasonia vitripennis
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Proctotrupomorpha; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    104 current Nvit_psr_1.1 (GCF_009193385.2) 5 Unlocalized Scaffold NC_045761.1 (12709376..12733894, complement)
    103 previous assembly Nvit_psr_1 (GCF_009193385.1) 5 Unlocalized Scaffold NW_022279650.1 (12709376..12733897, complement)

    Chromosome 5 - NC_045761.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116417631 Neighboring gene twinkle protein, mitochondrial Neighboring gene NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 1, 7kDa Neighboring gene huntingtin-interacting protein K Neighboring gene uncharacterized LOC103316087 Neighboring gene origin recognition complex subunit 2 Neighboring gene DNA excision repair protein ERCC-1 Neighboring gene STAM-binding protein-like A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional and evolutionary insights from the genomes of three parasitoid Nasonia species. Werren JH, et al. Science, 2010 Jan 15. PMID 20075255, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin protein ligase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein roadkill; speckle-type POZ protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Nasonia vitripennis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Nvit_psr_1.1

    Genomic

    1. NC_045761.1 Reference Nvit_psr_1.1

      Range
      12709376..12733894 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008207832.3 → XP_008206054.1  speckle-type POZ protein isoform X1

      UniProtKB/TrEMBL
      A0A7M7LQT0
      Conserved Domains (4) summary
      smart00225
      Location:264 → 360
      BTB; Broad-Complex, Tramtrack and Bric a brac
      cd14734
      Location:360 → 422
      SPOP_C; BACK-like Domain C-terminal to BTB in speckle-type POZ protein (SPOP) and similar proteins
      pfam00651
      Location:253 → 357
      BTB; BTB/POZ domain
      cl02446
      Location:87 → 229
      MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...

    2. XM_032600434.1 → XP_032456325.1  protein roadkill isoform X4

      UniProtKB/TrEMBL
      A0A7M7R0E2

    3. XM_008207833.4 → XP_008206055.1  speckle-type POZ protein isoform X2

      UniProtKB/TrEMBL
      A0A7M7H9T7
      Conserved Domains (4) summary
      smart00225
      Location:260 → 356
      BTB; Broad-Complex, Tramtrack and Bric a brac
      cd14734
      Location:356 → 418
      SPOP_C; BACK-like Domain C-terminal to BTB in speckle-type POZ protein (SPOP) and similar proteins
      pfam00651
      Location:249 → 353
      BTB; BTB/POZ domain
      cl02446
      Location:87 → 225
      MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...

    4. XM_032600435.1 → XP_032456326.1  protein roadkill isoform X4

      UniProtKB/TrEMBL
      A0A7M7R0E2

    5. XM_032600436.1 → XP_032456327.1  protein roadkill isoform X5

      UniProtKB/TrEMBL
      A0A7M7R2H4
      Conserved Domains (3) summary
      cd18345
      Location:186 → 306
      BTB_POZ_roadkill-like; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster protein roadkill and similar proteins
      cl02446
      Location:28 → 170
      MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
      cl28903
      Location:301 → 374
      BACK; BACK (BTB and C-terminal Kelch) domain

    6. XM_031931701.2 → XP_031787561.1  speckle-type POZ protein isoform X3

      UniProtKB/TrEMBL
      A0A7M7QHJ4
      Conserved Domains (3) summary
      cd18345
      Location:214 → 334
      BTB_POZ_roadkill-like; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster protein roadkill and similar proteins
      cl02446
      Location:56 → 198
      MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
      cl28903
      Location:329 → 402
      BACK; BACK (BTB and C-terminal Kelch) domain

    7. XM_031931702.2 → XP_031787562.1  speckle-type POZ protein isoform X3

      UniProtKB/TrEMBL
      A0A7M7QHJ4
      Conserved Domains (3) summary
      cd18345
      Location:214 → 334
      BTB_POZ_roadkill-like; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster protein roadkill and similar proteins
      cl02446
      Location:56 → 198
      MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
      cl28903
      Location:329 → 402
      BACK; BACK (BTB and C-terminal Kelch) domain
    Nucleotide Protein Strain
    Heading Accession and Version

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