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    LOC100121885 signal transducer and activator of transcription 5B [ Nasonia vitripennis (jewel wasp) ]

    Gene ID: 100121885, updated on 11-Apr-2024

    Summary

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    Gene symbol
    LOC100121885
    Gene description
    signal transducer and activator of transcription 5B
    See related
    NASONIABASE:NV13582
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Nasonia vitripennis
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Proctotrupomorpha; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    104 current Nvit_psr_1.1 (GCF_009193385.2) 5 Unlocalized Scaffold NC_045761.1 (402746..417155, complement)
    103 previous assembly Nvit_psr_1 (GCF_009193385.1) 5 Unlocalized Scaffold NW_022279650.1 (402746..417124, complement)

    Chromosome 5 - NC_045761.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L23a Neighboring gene ras-related protein Rab-34 Neighboring gene pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 Neighboring gene phosphatidylinositol 4-kinase type 2-alpha Neighboring gene uncharacterized LOC100216322 Neighboring gene protein PTCD3 homolog, mitochondrial Neighboring gene microRNA mir-92a Neighboring gene uncharacterized LOC100121953

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional and evolutionary insights from the genomes of three parasitoid Nasonia species. Werren JH, et al. Science, 2010 Jan 15. PMID 20075255, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell surface receptor signaling pathway via JAK-STAT IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in defense response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cell population proliferation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in brush border membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    major facilitator superfamily domain-containing protein 10; signal transducer and activator of transcription 5B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Nasonia vitripennis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Nvit_psr_1.1

    Genomic

    1. NC_045761.1 Reference Nvit_psr_1.1

      Range
      402746..417155 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031932179.1 → XP_031788039.1  signal transducer and activator of transcription 5B isoform X1

      UniProtKB/TrEMBL
      A0A7M7QWY5
      Conserved Domains (4) summary
      cd09919
      Location:580 → 690
      SH2_STAT_family; Src homology 2 (SH2) domain found in signal transducer and activator of transcription (STAT) family
      cd16855
      Location:144 → 337
      STAT5_CCD; Coiled-coil domain of Signal Transducer and Activator of Transcription 5 (STAT5)
      cd16849
      Location:339 → 498
      STAT5_DBD; DNA-binding domain of Signal Transducer and Activator of Transcription 5 (STAT5)
      pfam02865
      Location:2 → 125
      STAT_int; STAT protein, protein interaction domain

    2. XM_001605445.6 → XP_001605495.2  signal transducer and activator of transcription 5B isoform X1

      See identical proteins and their annotated locations for XP_001605495.2

      UniProtKB/TrEMBL
      A0A7M7QWY5
      Conserved Domains (4) summary
      cd09919
      Location:580 → 690
      SH2_STAT_family; Src homology 2 (SH2) domain found in signal transducer and activator of transcription (STAT) family
      cd16855
      Location:144 → 337
      STAT5_CCD; Coiled-coil domain of Signal Transducer and Activator of Transcription 5 (STAT5)
      cd16849
      Location:339 → 498
      STAT5_DBD; DNA-binding domain of Signal Transducer and Activator of Transcription 5 (STAT5)
      pfam02865
      Location:2 → 125
      STAT_int; STAT protein, protein interaction domain

    3. XM_032600146.1 → XP_032456037.1  signal transducer and activator of transcription 5B isoform X1

      UniProtKB/TrEMBL
      A0A7M7QWY5
      Conserved Domains (4) summary
      cd09919
      Location:580 → 690
      SH2_STAT_family; Src homology 2 (SH2) domain found in signal transducer and activator of transcription (STAT) family
      cd16855
      Location:144 → 337
      STAT5_CCD; Coiled-coil domain of Signal Transducer and Activator of Transcription 5 (STAT5)
      cd16849
      Location:339 → 498
      STAT5_DBD; DNA-binding domain of Signal Transducer and Activator of Transcription 5 (STAT5)
      pfam02865
      Location:2 → 125
      STAT_int; STAT protein, protein interaction domain

    4. XM_001605460.6 → XP_001605510.1  major facilitator superfamily domain-containing protein 10 isoform X2

      UniProtKB/TrEMBL
      A0A7M7G6L8
      Conserved Domains (2) summary
      cd06174
      Location:88 → 447
      MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
      pfam07690
      Location:88 → 417
      MFS_1; Major Facilitator Superfamily

    RNA

    1. XR_004227961.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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