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Slc43a1 solute carrier family 43, member 1 [ Mus musculus (house mouse) ]

Gene ID: 72401, updated on 17-Mar-2015
Official Symbol
Slc43a1provided by MGI
Official Full Name
solute carrier family 43, member 1provided by MGI
Primary source
MGI:MGI:1931352
See related
Ensembl:ENSMUSG00000027075; Vega:OTTMUSG00000013724
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Lat3; PB39; Pov1; R00504; AA986141; 2610016F07Rik
Orthologs
See Slc43a1 in MapViewer
Location:
2; 2 E1
Exon count:
17
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 2 NC_000068.7 (84838888..84863586)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (84679565..84703743)

Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene smoothelin-like 1 Neighboring gene uncharacterized LOC105244220 Neighboring gene translocase of inner mitochondrial membrane 10 Neighboring gene reticulon 4 receptor-like 2 Neighboring gene solute carrier family 43, member 3

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
L-amino acid transmembrane transporter activity IDA
Inferred from Direct Assay
more info
PubMed 
neutral amino acid transmembrane transporter activity ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
L-alpha-amino acid transmembrane transport IDA
Inferred from Direct Assay
more info
PubMed 
L-amino acid transport IDA
Inferred from Direct Assay
more info
PubMed 
amino acid transmembrane transport ISO
Inferred from Sequence Orthology
more info
 
amino acid transport IEA
Inferred from Electronic Annotation
more info
 
neutral amino acid transport ISO
Inferred from Sequence Orthology
more info
 
transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
large neutral amino acids transporter small subunit 3
Names
large neutral amino acids transporter small subunit 3
L-type amino acid transporter 3
prostate cancer overexpressed gene 1
slc43a1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001081349.2NP_001074818.2  large neutral amino acids transporter small subunit 3 isoform 1

    See identical proteins and their annotated locations for NP_001074818.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
    Source sequence(s)
    AK046758, BX522717, CJ307166
    Consensus CDS
    CCDS50624.1
    UniProtKB/TrEMBL
    G3X8X3
    Related
    ENSMUSP00000028469, ENSMUST00000028469
    Conserved Domains (1) summary
    cd06174
    Location:118262
    MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
  2. NM_001083809.1NP_001077278.1  large neutral amino acids transporter small subunit 3 isoform 3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR and has multiple coding region differences, compared to variant 1. These differences cause translation initiation from a distinct ATG and an isoform (3) with a shorter, distinct N-terminus, compared to isoform 1.
    Source sequence(s)
    AK031215
    Consensus CDS
    CCDS38162.1
    UniProtKB/TrEMBL
    A2ATS4
    UniProtKB/Swiss-Prot
    Q8BSM7
    Related
    ENSMUSP00000107252, OTTMUSP00000014700, ENSMUST00000111625, OTTMUST00000032895
    Conserved Domains (1) summary
    cd06174
    Location:101245
    MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
  3. NM_024497.1NP_078773.1  large neutral amino acids transporter small subunit 3 isoform 2

    See identical proteins and their annotated locations for NP_078773.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR and has multiple coding region differences, compared to variant 1. These differences cause translation initiation from a downstream ATG and an isoform (2) with a shorter N-terminus, compared to isoform 1.
    Source sequence(s)
    BC053747, CJ186653, CJ307166
    Consensus CDS
    CCDS38163.1
    UniProtKB/Swiss-Prot
    Q8BSM7
    Related
    ENSMUSP00000107251, OTTMUSP00000014693, ENSMUST00000111624, OTTMUST00000032885
    Conserved Domains (1) summary
    cd06174
    Location:75219
    MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000068.7 Reference GRCm38.p3 C57BL/6J

    Range
    84838888..84863586
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006500231.2XP_006500294.1  

    Conserved Domains (1) summary
    cd06174
    Location:51195
    MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
  2. XM_006500230.2XP_006500293.1  

    See identical proteins and their annotated locations for XP_006500293.1

    UniProtKB/Swiss-Prot
    Q8BSM7
    Related
    ENSMUSP00000112642, OTTMUSP00000014692, ENSMUST00000121114, OTTMUST00000032884
    Conserved Domains (1) summary
    cd06174
    Location:75219
    MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
  3. XM_006500228.2XP_006500291.2  

    Conserved Domains (1) summary
    cd06174
    Location:118262
    MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
  4. XM_006500229.2XP_006500292.2  

    Conserved Domains (1) summary
    cd06174
    Location:118262
    MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
  5. XM_006500232.2XP_006500295.2  

    Conserved Domains (1) summary
    cd06174
    Location:118262
    MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...
  6. XM_006500233.2XP_006500296.2  

    Conserved Domains (1) summary
    cd06174
    Location:118262
    MFS; The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of ...

Alternate Mm_Celera

Genomic

  1. AC_000024.1 Alternate Mm_Celera

    Range
    86437558..86461734
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)