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    adiY DNA-binding transcriptional activator AdiY [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948627, updated on 6-Oct-2023

    Summary

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    Gene symbol
    adiY
    Gene description
    DNA-binding transcriptional activator AdiY
    Primary source
    ASAP:ABE-0013479
    Locus tag
    b4116
    See related
    ECOCYC:EG11966
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK4109
    Summary
    AdiY is a positive DNA-binding transcriptional regulator that controls the arginine decarboxylase (adi) system, which is strongly induced in rich medium, under anaerobic conditions, and at low pH . [More information is available at EcoCyc: EG11966].
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    Genomic context

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    Sequence:
    NC_000913.3 (4337168..4337929, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene DNA-binding transcriptional dual regulator BasR Neighboring gene phosphoethanolamine transferase EptA Neighboring gene arginine:agmatine antiporter Neighboring gene arginine decarboxylase, degradative Neighboring gene DNA-binding transcriptional dual regulator MelR

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Effect of the local anesthetics phenethyl alcohol and procaine on hns mutants of the acid-induced biodegradative arginine (adi) and lysine (cad) decarboxylases of Escherichia coli. Stim-Herndon KP. Curr Microbiol, 1995 May. PMID 7537138
    2. YjdE (AdiC) is the arginine:agmatine antiporter essential for arginine-dependent acid resistance in Escherichia coli. Gong S, et al. J Bacteriol, 2003 Aug. PMID 12867448, Free PMC Article
    3. Molecular characterization of adiY, a regulatory gene which affects expression of the biodegradative acid-induced arginine decarboxylase gene (adiA) of Escherichia coli. Stim-Herndon KP, et al. Microbiology (Reading), 1996 May. PMID 8704970
    4. Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes. Burland V, et al. Nucleic Acids Res, 1995 Jun 25. PMID 7610040, Free PMC Article
    5. Large-scale identification of protein-protein interaction of Escherichia coli K-12. Arifuzzaman M, et al. Genome Res, 2006 May. PMID 16606699, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within positive regulation of DNA-templated transcription IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within positive regulation of DNA-templated transcription ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    DNA-binding transcriptional activator AdiY

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      4337168..4337929 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_418540.1 DNA-binding transcriptional activator AdiY [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_418540.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8S7XRG4
      Conserved Domains (1) summary
      PRK09978
      Location:55 → 243
      PRK09978; DNA-binding transcriptional regulator GadX; Provisional
    Nucleotide Protein
    Heading Accession and Version

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