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    LINC01101 long intergenic non-protein coding RNA 1101 [ Homo sapiens (human) ]

    Gene ID: 84931, updated on 10-Oct-2023

    Summary

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    Official Symbol
    LINC01101provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1101provided by HGNC
    Primary source
    HGNC:HGNC:25923
    See related
    Ensembl:ENSG00000280409 AllianceGenome:HGNC:25923
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    Location:
    2q14.2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (120464335..120466349, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (120899913..120901927, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (121221911..121223925, complement)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene putative cuticle collagen 91 Neighboring gene CRISPRi-validated cis-regulatory element chr2.4367 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:121110159-121110862 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:121110863-121111564 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:121114094-121114669 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr2:121130783-121131676 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:121133461-121134352 Neighboring gene inhibin subunit beta B Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:121152410-121153223 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:121187849-121188837 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:121199691-121200316 Neighboring gene ReSE screen-validated silencer GRCh37_chr2:121209011-121209167 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:121210803-121212002 Neighboring gene NANOG hESC enhancer GRCh37_chr2:121214333-121214894 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr2:121223679-121224221 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:121256367-121256872 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:121261397-121261898 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:121269051-121269670 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:121269671-121270289 Neighboring gene uncharacterized LOC105373585 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr2:121301087-121302286 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 16461 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11919 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:121317507-121318008 Neighboring gene NANOG hESC enhancer GRCh37_chr2:121332587-121333189 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:121345700-121346593 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:121352388-121352896 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:121355088-121355588 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:121355589-121356089 Neighboring gene Sharpr-MPRA regulatory region 1201 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:121366968-121367468 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:121412505-121413005 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:121419009-121419957 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr2:121426571-121427770 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:121463233-121463948 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:121466954-121467822 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:121467823-121468690 Neighboring gene uncharacterized LOC124906073 Neighboring gene uncharacterized LOC124907881 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:121492073-121492720

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. LINC01101 and LINC00277 expression levels as novel factors in HPV-induced cervical neoplasia. Iancu IV, et al. J Cell Mol Med, 2017 Dec. PMID 28767188, Free PMC Article
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. HPV-positive cervical neoplasia patients exhibit significantly reduced LINC01101 and LINC00277 expression levels.
      Title: LINC01101 and LINC00277 expression levels as novel factors in HPV-induced cervical neoplasia.
    Submit: New GeneRIF Correction

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    Clone Names

    • FLJ14816, MGC138410

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_027181.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC073257, AK027722
      Related
      ENST00000622953.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      120464335..120466349 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      120899913..120901927 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_032845.1: Suppressed sequence

      Description
      NM_032845.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
    Nucleotide Protein
    Heading Accession and Version

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