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    OGT O-linked N-acetylglucosamine (GlcNAc) transferase [ Sus scrofa (pig) ]

    Gene ID: 664652, updated on 5-Mar-2024

    Summary

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    Gene symbol
    OGT
    Gene description
    O-linked N-acetylglucosamine (GlcNAc) transferase
    See related
    Ensembl:ENSSSCG00000012403
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Expression
    Ubiquitous expression in spleen (RPKM 54.7), lung (RPKM 38.9) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: X
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) X NC_010461.5 (57521091..57558467)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) X NC_010461.4 (64962783..65000186)

    Chromosome X - NC_010461.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110257711 Neighboring gene TATA-box binding protein associated factor 1 Neighboring gene suppressor of cytokine signaling 6-like Neighboring gene germ cell nuclear acidic peptidase Neighboring gene C-X-C motif chemokine receptor 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

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    Related articles in PubMed

    1. Removal of O-GlcNAcylation is important for pig preimplantation development. Shibutani M, et al. J Reprod Dev, 2015. PMID 26004176, Free PMC Article
    2. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
    3. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein N-acetylglucosaminyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein O-linked glycosylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit
    Names
    O-GlcNAc transferase subunit p110
    O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)
    O-linked N-acetylglucosamine transferase 110 kDa subunit
    NP_001034837.1
    XP_005673769.1
    XP_005673770.1
    XP_013841689.1
    XP_013841690.1
    XP_020935236.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001039748.2 → NP_001034837.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit

      See identical proteins and their annotated locations for NP_001034837.1

      Status: PROVISIONAL

      Source sequence(s)
      DQ400859
      UniProtKB/Swiss-Prot
      Q27HV0
      UniProtKB/TrEMBL
      A0A8D1ECS3
      Related
      ENSSSCP00000028433.3, ENSSSCT00000035659.4
      Conserved Domains (7) summary
      cd05804
      Location:120 → 280
      StaR_like; StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been ...
      COG0457
      Location:204 → 461
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:327 → 355
      TPR; TPR repeat [structural motif]
      pfam00515
      Location:89 → 122
      TPR_1; Tetratricopeptide repeat
      pfam13414
      Location:89 → 154
      TPR_11; TPR repeat
      pfam13424
      Location:153 → 223
      TPR_12; Tetratricopeptide repeat
      pfam13844
      Location:556 → 1024
      Glyco_transf_41; Glycosyl transferase family 41

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010461.5 Reference Sscrofa11.1 Primary Assembly

      Range
      57521091..57558467
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005673713.3 → XP_005673770.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X2

      See identical proteins and their annotated locations for XP_005673770.1

      UniProtKB/TrEMBL
      A0A8D1PML0
      Conserved Domains (3) summary
      TIGR02917
      Location:23 → 455
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:317 → 345
      TPR; TPR repeat [structural motif]
      pfam13844
      Location:466 → 1006
      Glyco_transf_41; Glycosyl transferase family 41

    2. XM_005673712.3 → XP_005673769.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X1

      See identical proteins and their annotated locations for XP_005673769.1

      UniProtKB/TrEMBL
      A0A4X1W241, A0A8D0RX56, A0A8D1ECS3, K7GSL3
      Related
      ENSSSCP00000030900.1, ENSSSCT00000032783.4
      Conserved Domains (3) summary
      TIGR02917
      Location:22 → 465
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:327 → 355
      TPR; TPR repeat [structural motif]
      pfam13844
      Location:476 → 1016
      Glyco_transf_41; Glycosyl transferase family 41

    3. XM_013986235.2 → XP_013841689.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X1

      UniProtKB/TrEMBL
      A0A4X1W241, A0A8D0RX56, A0A8D1ECS3, K7GSL3
      Conserved Domains (3) summary
      TIGR02917
      Location:22 → 465
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:327 → 355
      TPR; TPR repeat [structural motif]
      pfam13844
      Location:476 → 1016
      Glyco_transf_41; Glycosyl transferase family 41

    4. XM_021079577.1 → XP_020935236.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X3

      UniProtKB/TrEMBL
      A0A8D0V3R8
      Conserved Domains (3) summary
      sd00006
      Location:327 → 355
      TPR; TPR repeat [structural motif]
      pfam13844
      Location:556 → 989
      Glyco_transf_41; Glycosyl transferase family 41
      cl26002
      Location:22 → 465
      TPR_11; TPR repeat

    5. XM_013986236.2 → XP_013841690.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X2

      UniProtKB/TrEMBL
      A0A8D1PML0
      Conserved Domains (3) summary
      TIGR02917
      Location:23 → 455
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:317 → 345
      TPR; TPR repeat [structural motif]
      pfam13844
      Location:466 → 1006
      Glyco_transf_41; Glycosyl transferase family 41
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q27HV0.1 GenPept UniProtKB/Swiss-Prot:Q27HV0

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