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    NFKBIL1 NFKB inhibitor like 1 [ Bos taurus (cattle) ]

    Gene ID: 514369, updated on 5-Mar-2024

    Summary

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    Official Symbol
    NFKBIL1provided by VGNC
    Official Full Name
    NFKB inhibitor like 1provided by VGNC
    Primary source
    VGNC:VGNC:32049
    See related
    BGD:BT11585; Ensembl:ENSBTAG00000014492
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 23
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 23 NC_037350.1 (27732885..27743615, complement)

    Chromosome 23 - NC_037350.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100847561 Neighboring gene tumor necrosis factor Neighboring gene lymphotoxin alpha Neighboring gene ATPase H+ transporting V1 subunit G2 Neighboring gene small nucleolar RNA SNORD83 Neighboring gene DExD-box helicase 39B

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037350.1 Chromosome 23 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
    2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in canonical NF-kappaB signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of toll-like receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    NF-kappa-B inhibitor-like protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001015597.1 → NP_001015597.1  NF-kappa-B inhibitor-like protein 1

      See identical proteins and their annotated locations for NP_001015597.1

      Status: PROVISIONAL

      Source sequence(s)
      BT020645
      UniProtKB/TrEMBL
      Q5EAC4
      Conserved Domains (4) summary
      cd00204
      Location:68 → 138
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:42 → 109
      Ank_2; Ankyrin repeats (3 copies)
      pfam13857
      Location:83 → 141
      Ank_5; Ankyrin repeats (many copies)
      sd00045
      Location:64 → 95
      ANK; ANK repeat [structural motif]

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037350.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      27732885..27743615 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005223652.5 → XP_005223709.1  NF-kappa-B inhibitor-like protein 1 isoform X1

      See identical proteins and their annotated locations for XP_005223709.1

      Conserved Domains (4) summary
      cd00204
      Location:45 → 115
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:19 → 86
      Ank_2; Ankyrin repeats (3 copies)
      pfam13857
      Location:60 → 118
      Ank_5; Ankyrin repeats (many copies)
      sd00045
      Location:41 → 72
      ANK; ANK repeat [structural motif]

    2. XM_005223653.5 → XP_005223710.1  NF-kappa-B inhibitor-like protein 1 isoform X1

      See identical proteins and their annotated locations for XP_005223710.1

      Related
      ENSBTAP00000019268.3, ENSBTAT00000019268.4
      Conserved Domains (4) summary
      cd00204
      Location:45 → 115
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:19 → 86
      Ank_2; Ankyrin repeats (3 copies)
      pfam13857
      Location:60 → 118
      Ank_5; Ankyrin repeats (many copies)
      sd00045
      Location:41 → 72
      ANK; ANK repeat [structural motif]
    Nucleotide Protein Strain
    Heading Accession and Version

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