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    Tmem200c transmembrane protein 200C [ Rattus norvegicus (Norway rat) ]

    Gene ID: 501201, updated on 13-Apr-2024

    Summary

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    Official Symbol
    Tmem200cprovided by RGD
    Official Full Name
    transmembrane protein 200Cprovided by RGD
    Primary source
    RGD:1561734
    See related
    Ensembl:ENSRNOG00000049880 AllianceGenome:RGD:1561734
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1561734
    Summary
    Predicted to be integral component of membrane. Orthologous to human TMEM200C (transmembrane protein 200C). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Brain (RPKM 57.6), Uterus (RPKM 16.7) and 7 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    9q38
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (116252780..116258618)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (108806063..108811901)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (117044533..117050371)

    Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene L3MBTL histone methyl-lysine binding protein 4 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase-like Neighboring gene uncharacterized LOC134480429 Neighboring gene ribosomal protein L24, pseudogene 2 Neighboring gene uncharacterized LOC134480430

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane protein 200C
    Names
    transmembrane protein TTMA

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001251926.1 → NP_001238855.1  transmembrane protein 200C

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000009
      UniProtKB/TrEMBL
      M0R5E3
      Related
      ENSRNOP00000064607.1, ENSRNOT00000072916.2
      Conserved Domains (1) summary
      pfam10177
      Location:14 → 208
      DUF2371; uncharacterized conserved protein (DUF2371)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086027.1 Reference GRCr8

      Range
      116252780..116258618
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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