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    Ccdc152 coiled-coil domain containing 152 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 499536, updated on 30-Mar-2024

    Summary

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    Official Symbol
    Ccdc152provided by RGD
    Official Full Name
    coiled-coil domain containing 152provided by RGD
    Primary source
    RGD:1561503
    See related
    Ensembl:ENSRNOG00000039473 AllianceGenome:RGD:1561503
    Gene type
    protein coding
    RefSeq status
    INFERRED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1561503
    Summary
    Orthologous to human CCDC152 (coiled-coil domain containing 152). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Liver (RPKM 8915.4), Kidney (RPKM 5291.1) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    2q16
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (54236013..54260531, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (52507987..52532880, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (53116105..53140661, complement)

    Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene coenzyme Q-binding protein COQ10 homolog B, mitochondrial-like Neighboring gene uncharacterized LOC102548571 Neighboring gene selenoprotein P Neighboring gene uncharacterized LOC103691472 Neighboring gene growth hormone receptor Neighboring gene uncharacterized LOC102548637

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 152

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001191959.1 → NP_001178888.1  coiled-coil domain-containing protein 152

      See identical proteins and their annotated locations for NP_001178888.1

      Status: INFERRED

      Source sequence(s)
      JAXUCZ010000002
      UniProtKB/TrEMBL
      F1M7D1
      Conserved Domains (1) summary
      PLN03229
      Location:42 → 247
      PLN03229; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086020.1 Reference GRCr8

      Range
      54236013..54260531 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017591017.3 → XP_017446506.1  coiled-coil domain-containing protein 152 isoform X4

      UniProtKB/TrEMBL
      A0A8I5Y1T3
      Related
      ENSRNOP00000077613.1

    2. XM_006231988.5 → XP_006232050.1  coiled-coil domain-containing protein 152 isoform X2

      See identical proteins and their annotated locations for XP_006232050.1

      UniProtKB/TrEMBL
      F1M7D1
      Related
      ENSRNOP00000057234.2
      Conserved Domains (1) summary
      PLN03229
      Location:42 → 247
      PLN03229; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

    3. XM_063282349.1 → XP_063138419.1  coiled-coil domain-containing protein 152 isoform X3

    4. XM_063282348.1 → XP_063138418.1  coiled-coil domain-containing protein 152 isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version

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