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    Xkrx XK related, X-linked [ Rattus norvegicus (Norway rat) ]

    Gene ID: 497101, updated on 3-Apr-2024

    Summary

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    Official Symbol
    Xkrxprovided by RGD
    Official Full Name
    XK related, X-linkedprovided by RGD
    Primary source
    RGD:1359223
    See related
    Ensembl:ENSRNOG00000067363 AllianceGenome:RGD:1359223
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    XRG2
    Summary
    Predicted to be integral component of membrane. Orthologous to human XKRX (XK related X-linked). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Spleen (RPKM 53.6), Thymus (RPKM 23.0) and 1 other tissue See more
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    Xq32
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (101634438..101733814, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (97341158..97353175, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (104973083..104984261, complement)

    Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene cleavage stimulation factor subunit 2 Neighboring gene 60S ribosomal protein L36a-like Neighboring gene NADPH oxidase 1 Neighboring gene ADP ribosylation factor like GTPase 13A Neighboring gene tRNA methyltransferase 2 homolog B Neighboring gene transmembrane protein 35A Neighboring gene centromere protein I

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    XK-related protein 2
    Names
    X Kell blood group precursor related X linked
    XK, Kell blood group complex subunit-related, X-linked
    x Kell blood group-related, X-linked

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001012230.1 → NP_001012230.1  XK-related protein 2

      See identical proteins and their annotated locations for NP_001012230.1

      Status: PROVISIONAL

      Source sequence(s)
      AY534257
      UniProtKB/Swiss-Prot
      Q5GH60
      UniProtKB/TrEMBL
      A6IVE5
      Related
      ENSRNOP00000090437.1, ENSRNOT00000114392.1
      Conserved Domains (1) summary
      pfam09815
      Location:35 → 406
      XK-related; XK-related protein

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086039.1 Reference GRCr8

      Range
      101634438..101733814 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063280193.1 → XP_063136263.1  XK-related protein 2 isoform X1

      UniProtKB/Swiss-Prot
      Q5GH60
      UniProtKB/TrEMBL
      A6IVE5

    2. XM_063280190.1 → XP_063136260.1  XK-related protein 2 isoform X1

      UniProtKB/Swiss-Prot
      Q5GH60
      UniProtKB/TrEMBL
      A6IVE5

    3. XM_063280188.1 → XP_063136258.1  XK-related protein 2 isoform X1

      UniProtKB/Swiss-Prot
      Q5GH60
      UniProtKB/TrEMBL
      A6IVE5

    4. XM_063280192.1 → XP_063136262.1  XK-related protein 2 isoform X1

      UniProtKB/Swiss-Prot
      Q5GH60
      UniProtKB/TrEMBL
      A6IVE5

    5. XM_063280195.1 → XP_063136265.1  XK-related protein 2 isoform X1

      UniProtKB/Swiss-Prot
      Q5GH60
      UniProtKB/TrEMBL
      A6IVE5

    6. XM_063280187.1 → XP_063136257.1  XK-related protein 2 isoform X1

      UniProtKB/Swiss-Prot
      Q5GH60
      UniProtKB/TrEMBL
      A6IVE5

    7. XM_063280189.1 → XP_063136259.1  XK-related protein 2 isoform X1

      UniProtKB/Swiss-Prot
      Q5GH60
      UniProtKB/TrEMBL
      A6IVE5

    8. XM_063280191.1 → XP_063136261.1  XK-related protein 2 isoform X1

      UniProtKB/Swiss-Prot
      Q5GH60
      UniProtKB/TrEMBL
      A6IVE5

    9. XM_063280194.1 → XP_063136264.1  XK-related protein 2 isoform X1

      UniProtKB/Swiss-Prot
      Q5GH60
      UniProtKB/TrEMBL
      A6IVE5

    10. XM_039099958.2 → XP_038955886.1  XK-related protein 2 isoform X2

      Conserved Domains (1) summary
      pfam09815
      Location:19 → 225
      XK-related; XK-related protein
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5GH60.1 GenPept UniProtKB/Swiss-Prot:Q5GH60

    Gene LinkOut

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