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    Glt8d1 glycosyltransferase 8 domain containing 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 306253, updated on 3-Apr-2024

    Summary

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    Official Symbol
    Glt8d1provided by RGD
    Official Full Name
    glycosyltransferase 8 domain containing 1provided by RGD
    Primary source
    RGD:1359293
    See related
    Ensembl:ENSRNOG00000018179 AllianceGenome:RGD:1359293
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Da2-24
    Summary
    Predicted to enable glycosyltransferase activity. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human GLT8D1 (glycosyltransferase 8 domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Testes (RPKM 148.6), Lung (RPKM 123.5) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    16p16
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 16 NC_086034.1 (6198152..6213671)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 16 NC_051351.1 (6192269..6207227)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (7082450..7097405)

    Chromosome 16 - NC_086034.1Genomic Context describing neighboring genes Neighboring gene inter-alpha trypsin inhibitor, heavy chain 3 Neighboring gene inter-alpha trypsin inhibitor, heavy chain 1 Neighboring gene NIMA-related kinase 4 Neighboring gene signal peptidase complex subunit 1 Neighboring gene small nucleolar RNA SNORD19B Neighboring gene small nucleolar RNA, C/D box 69 Neighboring gene G protein nucleolar 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Defining the membrane proteome of NK cells. Ghosh D, et al. J Mass Spectrom, 2010 Jan. PMID 19946888
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC94018

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables UDP-glycosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in Golgi apparatus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    glycosyltransferase 8 domain-containing protein 1
    Names
    glycosyltransferase AD-017
    NP_001007684.1
    XP_063131363.1
    XP_063131364.1
    XP_063131365.1
    XP_063131366.1
    XP_063131367.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001007683.1 → NP_001007684.1  glycosyltransferase 8 domain-containing protein 1

      See identical proteins and their annotated locations for NP_001007684.1

      Status: PROVISIONAL

      Source sequence(s)
      BC079066
      UniProtKB/Swiss-Prot
      Q6AYF6
      UniProtKB/TrEMBL
      A0A8L2Q662, A6KG13
      Related
      ENSRNOP00000013291.5, ENSRNOT00000013291.7
      Conserved Domains (1) summary
      cd06429
      Location:66 → 351
      GT8_like_1; GT8_like_1 represents a subfamily of GT8 with unknown function

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086034.1 Reference GRCr8

      Range
      6198152..6213671
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063275294.1 → XP_063131364.1  glycosyltransferase 8 domain-containing protein 1 isoform X1

      UniProtKB/Swiss-Prot
      Q6AYF6
      UniProtKB/TrEMBL
      A6KG13

    2. XM_063275293.1 → XP_063131363.1  glycosyltransferase 8 domain-containing protein 1 isoform X1

      UniProtKB/Swiss-Prot
      Q6AYF6
      UniProtKB/TrEMBL
      A6KG13

    3. XM_063275297.1 → XP_063131367.1  glycosyltransferase 8 domain-containing protein 1 isoform X3

    4. XM_063275295.1 → XP_063131365.1  glycosyltransferase 8 domain-containing protein 1 isoform X1

      UniProtKB/Swiss-Prot
      Q6AYF6
      UniProtKB/TrEMBL
      A6KG13

    5. XM_063275296.1 → XP_063131366.1  glycosyltransferase 8 domain-containing protein 1 isoform X2

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6AYF6.1 GenPept UniProtKB/Swiss-Prot:Q6AYF6

    Gene LinkOut

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