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    SYNGR2P1 synaptogyrin 2 pseudogene 1 [ Homo sapiens (human) ]

    Gene ID: 283698, updated on 10-Oct-2023

    Summary

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    Official Symbol
    SYNGR2P1provided by HGNC
    Official Full Name
    synaptogyrin 2 pseudogene 1provided by HGNC
    Primary source
    HGNC:HGNC:11500
    See related
    AllianceGenome:HGNC:11500
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    SYNGR2P
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    Genomic context

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    Location:
    15q13.2
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (30044440..30046080)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (27836167..27837807)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (30336643..30338283)

    Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene tight junction protein 1 Neighboring gene uncharacterized LOC124903451 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:30164609-30165110 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:30165111-30165610 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:30171032-30171214 Neighboring gene H3K27ac hESC enhancer GRCh37_chr15:30215957-30216506 Neighboring gene Sharpr-MPRA regulatory region 13292 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr15:30226175-30227374 Neighboring gene ReSE screen-validated silencer GRCh37_chr15:30318078-30318268 Neighboring gene non-SMC condensin I complex subunit G pseudogene 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:30375577-30376156 Neighboring gene RNA, 7SL, cytoplasmic 673, pseudogene Neighboring gene golgin A8 family member J Neighboring gene dynamin 1 pseudogene 28

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization of the human synaptogyrin gene family. Kedra D, et al. Hum Genet, 1998 Aug. PMID 9760194

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    Other Names

    • cellugyrin pseudogene

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_003218.3 

      Range
      101..1741
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      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

      Range
      30044440..30046080
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      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_011332701.1 Reference GRCh38.p14 PATCHES

      Range
      2217157..2218797
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      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 PATCHES

    Genomic

    1. NW_012132920.1 Reference GRCh38.p14 PATCHES

      Range
      32120..33760
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      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 ALT_REF_LOCI_2

    Genomic

    1. NT_187660.1 Reference GRCh38.p14 ALT_REF_LOCI_2

      Range
      2329641..2331281
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      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060939.1 Alternate T2T-CHM13v2.0

      Range
      27836167..27837807
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      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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