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    B3GAT1-DT B3GAT1 divergent transcript [ Homo sapiens (human) ]

    Gene ID: 283177, updated on 10-Oct-2023

    Summary

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    Official Symbol
    B3GAT1-DTprovided by HGNC
    Official Full Name
    B3GAT1 divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:27449
    See related
    Ensembl:ENSG00000255545 AllianceGenome:HGNC:27449
    Gene type
    ncRNA
    RefSeq status
    PREDICTED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in kidney (RPKM 1.1), small intestine (RPKM 1.1) and 13 other tissues See more
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    Genomic context

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    Location:
    11q25
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (134436482..134505661)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (134478514..134548064)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (134306376..134375555)

    Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902798 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134246355-134247254 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134263326-134264156 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:134267481-134268340 Neighboring gene beta-1,3-glucuronyltransferase 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134274303-134274804 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134280725-134281284 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134295447-134295948 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134295949-134296448 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134308936-134309436 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134335892-134336457 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134336458-134337022 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134343630-134344329 Neighboring gene MPRA-validated peak1527 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134378035-134378536 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134379792-134380320 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134379262-134379791 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134386567-134387092 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134397395-134397896 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134406331-134406830 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134410956-134411456 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134411457-134411957 Neighboring gene uncharacterized LOC124902799 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134442592-134443202 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134445354-134445854 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134445855-134446355 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134453879-134454524 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134454525-134455169 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:134455170-134455814 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_19765 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:134484673-134485174 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:134507261-134507391 Neighboring gene uncharacterized LOC105369583

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Identification of prognostic long noncoding RNAs associated with spontaneous regression of neuroblastoma. Meng X, et al. Cancer Med, 2020 Jun. PMID 32216054, Free PMC Article
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    Other Names

    • B3GAT1 diverget transcript

    Clone Names

    • AP004608.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_033852.1 RNA Sequence

      Status: PREDICTED

      Source sequence(s)
      AP003971, AP004608
      Related
      ENST00000531319.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

      Range
      134436482..134505661
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060935.1 Alternate T2T-CHM13v2.0

      Range
      134478514..134548064
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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