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    FBXO7 F-box protein 7 [ Homo sapiens (human) ]

    Gene ID: 25793, updated on 13-Jun-2013
    Official Symbol
    FBXO7provided by HGNC
    Official Full Name
    F-box protein 7provided by HGNC
    Primary source
    HGNC:13586
    Locus tag
    LL22NC03-28H9.2
    See related
    Ensembl:ENSG00000100225; HPRD:07292; MIM:605648; Vega:OTTHUMG00000030674
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    FBX; FBX7; PKPS; FBX07; PARK15
    Summary
    This gene encodes a member of the F-box protein family which is characterized by an approximately 40 amino acid motif, the F-box. The F-box proteins constitute one of the four subunits of the ubiquitin protein ligase complex called SCFs (SKP1-cullin-F-box), which function in phosphorylation-dependent ubiquitination. The F-box proteins are divided into 3 classes: Fbws containing WD-40 domains, Fbls containing leucine-rich repeats, and Fbxs containing either different protein-protein interaction modules or no recognizable motifs. The protein encoded by this gene belongs to the Fbxs class and it may play a role in regulation of hematopoiesis. Alternatively spliced transcript variants of this gene have been identified with the full-length natures of only some variants being determined. [provided by RefSeq, Jul 2008]
    Location :
    22q12-q13
    Sequence :
    Chromosome: 22; NC_000022.10 (32870707..32894818)
    See FBXO7 in Epigenomics

    Chromosome 22 - NC_000022.10Genomic Context describing neighboring genes Neighboring gene RNA 2',3'-cyclic phosphate and 5'-OH ligase Neighboring gene BPI fold containing family C Neighboring gene synapsin III Neighboring gene TIMP metallopeptidase inhibitor 3 Neighboring gene like-glycosyltransferase Neighboring gene microRNA 4764

    GeneRIFs: Gene References Into Functions What's a GeneRIF?

    Parkinson disease 15

    Summary from GeneReviews: Parkinson Disease Overview Go to GeneReviews

    Disease Characteristics
    Parkinsonism refers to all clinical states characterized by tremor, muscle rigidity, and slowed movement (bradykinesia). Parkinson disease is the primary and most common form of parkinsonism. Psychiatric manifestations, which include depression and visual hallucinations, are common but not uniformly present. Dementia eventually occurs in at least 20% of cases. Generally, individuals with onset before age 20 years are considered to have juvenile-onset Parkinson disease, those with onset before age 50 years are classified as having early-onset Parkinson disease, and those with onset after age 50 years are considered to have late-onset Parkinson disease.
    Diagnosis Testing
    The diagnosis of Parkinson disease is based solely on the clinical findings of tremor, rigidity, and bradykinesia. A good response to levodopa and asymmetric onset of limb involvement are generally regarded as supporting diagnostic features. The cardinal pathologic feature of Parkinson disease is the loss of dopaminergic neurons in the substantia nigra with intracytoplasmic inclusions (Lewy bodies) in the remaining, intact nigral neurons. The genetic cause of some forms of Parkinson disease has been identified. Seven genes have been implicated. Mutations in three known genes, SNCA (PARK1), UCHL1 (PARK5), and LRRK2 (PARK8) and one mapped gene (PARK3) result in autosomal dominant Parkinson disease. Mutations in three known genes, PARK2 (PARK2), PARK7 (PARK7), and PINK1 (PARK6), result in autosomal recessive Parkinson disease. Three susceptibility genes have been identified.
    Genetic Counseling
    Parkinson disease can be inherited in an autosomal dominant or autosomal recessive manner; however, most cases of Parkinson disease are thought to result from the effects of multiple genes as well as environmental risk factors. Genetic counseling of affected individuals and their family members must be done on a family-by-family basis. The risk to first-degree relatives of a person with Parkinson disease varies from study to study and from country to country. In families with a non-mendelian form of Parkinson disease, first-degree relatives of an affected individual are between 2.7 and 3.5 times more likely to develop Parkinson disease than individuals without a family history of Parkinson disease. Their cumulative lifetime risk of developing Parkinson disease is therefore between 3% and 7%.
    References
    Products Interactant Other Gene Complex Source Pubs Description
    AAF04471.1 NP_008861.2 SKP1    BIND  PubMed Skp1 interacts with Fbx7. 
    NP_036311.2 SKP1    BIND  PubMed Skp1 interacts with Fbx7. 
    Q9Y3I1 Q13489 BIRC3    HPRD  PubMed  
    Q9Y3I1 Q99607 ELF4    HPRD  PubMed  
    Q9Y3I1 P63208 SKP1    HPRD  PubMed  
    BioGRID:117326 BioGRID:106826 BIRC2    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:117326 BioGRID:107432 CDC34    BioGRID  PubMed Biochemical Activity 
    BioGRID:117326 BioGRID:107456 CDK6    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:117326 BioGRID:116183 COPS5    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:117326 BioGRID:116176 COPS6    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:117326 BioGRID:114032 CUL1    BioGRID  PubMed Affinity Capture-MS; Affinity Capture-Western 
    BioGRID:117326 BioGRID:115131 DLGAP5    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:117326 BioGRID:110815 NEDD8    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:117326 BioGRID:114872 PSMF1    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex; Two-hybrid 
    BioGRID:117326 BioGRID:111865 RBBP6    BioGRID  PubMed Two-hybrid 
    BioGRID:117326 BioGRID:114991 SEC24C    BioGRID  PubMed Two-hybrid 
    BioGRID:117326 BioGRID:112391 SKP1    BioGRID  PubMed Affinity Capture-Western; Reconstituted Complex; Two-hybrid 
    BioGRID:117326 BioGRID:113038 TRAF2    BioGRID  PubMed Affinity Capture-Western 
    BioGRID:117326 BioGRID:113164 UBC    BioGRID  PubMed Affinity Capture-MS 
    BioGRID:117326 BioGRID:113170 UBE2D2    BioGRID  PubMed Biochemical Activity 
    BioGRID:117326 BioGRID:113348 XPO1    BioGRID  PubMed Reconstituted Complex 

    Markers

    Homology

    Clone Names

    • DKFZp686B08113

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    ubiquitin-protein ligase activity TAS
    Traceable Author Statement
    more info
    PubMed 
    Process Evidence Code Pubs
    cell death IEA
    Inferred from Electronic Annotation
    more info
     
    regulation of protein stability IDA
    Inferred from Direct Assay
    more info
    PubMed 
    ubiquitin-dependent protein catabolic process TAS
    Traceable Author Statement
    more info
    PubMed 
    Component Evidence Code Pubs
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    protein complex IDA
    Inferred from Direct Assay
    more info
     
    ubiquitin ligase complex TAS
    Traceable Author Statement
    more info
    PubMed 
    Preferred Names
    F-box only protein 7
    Names
    F-box only protein 7

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_016001.1 RefSeqGene

      Range
      5001..29112
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001033024.1NP_001028196.1  F-box only protein 7 isoform 2

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) contains a different 5' UTR and 5' coding region, compared to variant 1. This results in a shorter protein (isoform 2) with a distinct N- terminus, compared to isoform 1.
      Source sequence(s)
      AL050254, BI821903, BQ326686, BX409547
      Consensus CDS
      CCDS46695.1
      UniProtKB/Swiss-Prot
      Q9Y3I1
      Related
      ENSP00000371490, ENST00000382058
      Conserved Domains (2) summary
      pfam11566
      Location:103246
      Blast Score: 339
      PI31_Prot_N; PI31 proteasome regulator N-terminal
      pfam12937
      Location:256299
      Blast Score: 95
      F-box-like; F-box-like
    2. NM_001257990.1NP_001244919.1  F-box only protein 7 isoform 3

      Status: REVIEWED

      Description
      Transcript Variant: This variant (3) has an alternate exon in place of the first exon compared to variant 1. The resulting isoform (3) is shorter at the N-terminus compared to isoform 1.
      Source sequence(s)
      AK301716, AL021937, AL050254, BI821903
      Consensus CDS
      CCDS58806.1
      UniProtKB/Swiss-Prot
      Q9Y3I1
      Related
      ENSP00000380571, OTTHUMP00000028823, ENST00000397426, OTTHUMT00000075562
      Conserved Domains (2) summary
      pfam11566
      Location:68211
      Blast Score: 340
      PI31_Prot_N; PI31 proteasome regulator N-terminal
      pfam12937
      Location:221264
      Blast Score: 94
      F-box-like; F-box-like
    3. NM_012179.3NP_036311.3  F-box only protein 7 isoform 1

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and it encodes the longer protein (isoform 1).
      Source sequence(s)
      AL050254, BU584368, BX362053
      Consensus CDS
      CCDS13907.1
      UniProtKB/Swiss-Prot
      Q9Y3I1
      Related
      ENSP00000266087, OTTHUMP00000064010, ENST00000266087, OTTHUMT00000129001
      Conserved Domains (2) summary
      pfam11566
      Location:182325
      Blast Score: 336
      PI31_Prot_N; PI31 proteasome regulator N-terminal
      pfam12937
      Location:335378
      Blast Score: 93
      F-box-like; F-box-like

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh37.p10 Primary Assembly

    Genomic

    1. NC_000022.10 Reference GRCh37.p10 Primary Assembly

      Range
      32870707..32894818
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate HuRef

    Genomic

    1. AC_000154.1 Alternate HuRef

      Range
      15827931..15852000
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.0

    Genomic

    1. NC_018933.1 Alternate CHM1_1.0

      Range
      16792348..16816463
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)