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    LOC101929227 uncharacterized LOC101929227 [ Homo sapiens (human) ]

    Gene ID: 101929227, updated on 10-Oct-2023

    Summary

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    Gene symbol
    LOC101929227
    Gene description
    uncharacterized LOC101929227
    See related
    Ensembl:ENSG00000250493
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC101929227 in Genome Data Viewer
    Location:
    11q23.3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (120867933..120894797, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (120890930..120918496, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (120738642..120765506, complement)

    Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene glutamate ionotropic receptor kainate type subunit 4 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:120498105-120498605 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:120504647-120505626 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr11:120515748-120516454 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr11:120516455-120517161 Neighboring gene elongin C pseudogene 22 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:120530966-120531466 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:120537690-120538200 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:120538201-120538710 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:120551815-120552316 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:120566465-120566964 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5640 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:120581457-120582198 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr11:120630117-120630617 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:120642173-120642737 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:120647263-120648044 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:120646481-120647262 Neighboring gene NANOG hESC enhancer GRCh37_chr11:120662921-120663458 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:120667409-120667910 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:120667911-120668410 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:120669439-120670113 Neighboring gene uncharacterized LOC105369532 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:120704928-120705428 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr11:120744786-120745985 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:120771587-120772086 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3995 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3996 Neighboring gene Sharpr-MPRA regulatory region 13304 Neighboring gene uncharacterized LOC101929208 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:120826209-120826709 Neighboring gene high mobility group box 1 pseudogene 42

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_132790.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AP001929, AP004147, CR936773
      Related
      ENST00000505153.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

      Range
      120867933..120894797 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060935.1 Alternate T2T-CHM13v2.0

      Range
      120890930..120918496 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases