U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    Wincr1 WNT induced non-coding RNA 1 [ Mus musculus (house mouse) ]

    Gene ID: 100040617, updated on 8-Feb-2024

    Summary

    Official Symbol
    Wincr1provided by MGI
    Official Full Name
    WNT induced non-coding RNA 1provided by MGI
    Primary source
    MGI:MGI:3649757
    See related
    Ensembl:ENSMUSG00000085183 AllianceGenome:MGI:3649757
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm12603
    Summary
    Acts upstream of or within with a positive effect on gene expression. Is expressed in back skin; future brain; head skin; and neocortex. [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Low expression observed in reference dataset See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Wincr1 in Genome Data Viewer
    Location:
    4 C4; 4 42.12 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (88968544..89002847)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (89050307..89084610)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 49890 Neighboring gene microRNA 31 Neighboring gene predicted gene, 34568 Neighboring gene STARR-seq mESC enhancer starr_10732 Neighboring gene STARR-seq mESC enhancer starr_10733 Neighboring gene predicted gene 12602 Neighboring gene STARR-positive B cell enhancer ABC_E10240 Neighboring gene STARR-positive B cell enhancer ABC_E6189 Neighboring gene STARR-positive B cell enhancer ABC_E7974 Neighboring gene methylthioadenosine phosphorylase Neighboring gene ribosomal protein L17 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_033533.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL805899, BX255927
      Related
      ENSMUST00000146678.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      88968544..89002847
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)