Slc35a4 solute carrier family 35, member A4 [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Slc35a4provided by MGI
Official Full Name: solute carrier family 35, member A4provided by MGI
Primary source: MGI:MGI:1915093
See related: Ensembl:ENSMUSG00000033272 AllianceGenome:MGI:1915093
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: 2610030J16Rik
Summary: Predicted to enable pyrimidine nucleotide-sugar transmembrane transporter activity. Predicted to be involved in positive regulation of translation in response to stress. Predicted to act upstream of or within carbohydrate transport. Predicted to be located in Golgi apparatus. Predicted to be integral component of Golgi membrane. Is expressed in axial musculature; cranium; olfactory cortex ventricular layer; and telencephalon ventricular layer. Orthologous to human SLC35A4 (solute carrier family 35 member A4). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Ubiquitous expression in ovary adult (RPKM 89.9), adrenal adult (RPKM 87.5) and 28 other tissues See more
Orthologs: human all
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Genomic context

Location:: 18 B2; 18 19.46 cM

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	18	NC_000084.7 (36812268..36816915)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	18	NC_000084.6 (36679215..36683862)

Chromosome 18 - NC_000084.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics (MGI)

Gene trapped (1)

General gene information

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Markers

Slc35a4 (e-PCR), detects polymorphism
- UniSTS:547086

NoName (e-PCR)
- UniSTS:237782

GDB:182516 (e-PCR)
- UniSTS:155384

Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables pyrimidine nucleotide-sugar transmembrane transporter activity	IEA Inferred from Electronic Annotation more info
enables transmembrane transporter activity	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within carbohydrate transport	IEA Inferred from Electronic Annotation more info
involved_in positive regulation of translation in response to stress	ISO Inferred from Sequence Orthology more info
involved_in pyrimidine nucleotide-sugar transmembrane transport	IEA Inferred from Electronic Annotation more info
involved_in transmembrane transport	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
located_in Golgi apparatus	ISO Inferred from Sequence Orthology more info
is_active_in Golgi membrane	IBA Inferred from Biological aspect of Ancestor more info
located_in Golgi membrane	ISO Inferred from Sequence Orthology more info
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: probable UDP-sugar transporter protein SLC35A4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.