U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    celf1 cugbp, Elav-like family member 1 [ Danio rerio (zebrafish) ]

    Gene ID: 58137, updated on 11-Apr-2024

    Summary

    Official Symbol
    celf1provided by ZNC
    Official Full Name
    cugbp, Elav-like family member 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-000501-1
    See related
    Ensembl:ENSDARG00000005315 AllianceGenome:ZFIN:ZDB-GENE-000501-1
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    brul; cb920; CELF-1; cugbp1; im:7151366; si:dkey-30l20.6
    Summary
    Enables mRNA 3'-UTR binding activity. Involved in several processes, including developmental cell growth; liver development; and pancreas morphogenesis. Acts upstream of or within several processes, including embryonic liver development; endodermal digestive tract morphogenesis; and positive regulation of mRNA catabolic process. Located in pole plasm. Is expressed in several structures, including eye; gonad; lens placode; pectoral fin; and solid lens vesicle. Orthologous to human CELF1 (CUGBP Elav-like family member 1). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Location:
    chromosome: 7
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (38535934..38570951, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (38264676..38299692, complement)

    Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene solute carrier family 7 member 9 Neighboring gene nudix (nucleoside diphosphate linked moiety X)-type motif 19 Neighboring gene protein tyrosine phosphatase mitochondrial 1 Neighboring gene NADH:ubiquinone oxidoreductase core subunit S3

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

    Pathways from PubChem

    General gene information

    Markers

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables mRNA 3'-UTR binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables mRNA 3'-UTR binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables mRNA 3'-UTR binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables mRNA binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    located_in pole plasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    part_of ribonucleoprotein complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    CUGBP Elav-like family member 1
    Names
    CUG triplet repeat, RNA-binding protein 1
    CUG-BP- and ETR-3-like factor 1
    EDEN-BP/Bruno-like protein
    RNA-binding protein BRUNOL-2
    bruno-like protein 2

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001328413.1NP_001315342.1  CUGBP Elav-like family member 1 isoform 2

      Status: VALIDATED

      Source sequence(s)
      BX571680, CR318601, CT636421
      UniProtKB/Swiss-Prot
      Q9IBD0
      Related
      ENSDARP00000041054.7, ENSDART00000041055.9
      Conserved Domains (4) summary
      cd12631
      Location:53136
      RRM1_CELF1_2_Bruno; RNA recognition motif 1 in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
      cd12634
      Location:145224
      RRM2_CELF1_2; RNA recognition motif 2 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
      cd12638
      Location:442533
      RRM3_CELF1_2; RNA recognition motif 3 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
      TIGR01661
      Location:56529
      ELAV_HUD_SF; ELAV/HuD family splicing factor
    2. NM_131613.2NP_571688.1  CUGBP Elav-like family member 1 isoform 1

      See identical proteins and their annotated locations for NP_571688.1

      Status: VALIDATED

      Source sequence(s)
      BX571680, CR318601, CT636421, EH541949
      UniProtKB/Swiss-Prot
      Q7ZWE4, Q9IBD0
      Related
      ENSDARP00000115192.1, ENSDART00000134570.4
      Conserved Domains (4) summary
      cd12631
      Location:1598
      RRM1_CELF1_2_Bruno; RNA recognition motif 1 in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
      cd12634
      Location:107187
      RRM2_CELF1_2; RNA recognition motif 2 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
      cd12638
      Location:409500
      RRM3_CELF1_2; RNA recognition motif 3 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
      TIGR01661
      Location:18496
      ELAV_HUD_SF; ELAV/HuD family splicing factor

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007118.7 Reference GRCz11 Primary Assembly

      Range
      38535934..38570951 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009303337.3XP_009301612.1  CUGBP Elav-like family member 1 isoform X18

      UniProtKB/TrEMBL
      A0A8M3B1C7
      Conserved Domains (4) summary
      cd12631
      Location:1598
      RRM1_CELF1_2_Bruno; RNA recognition motif 1 in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
      cd12634
      Location:107186
      RRM2_CELF1_2; RNA recognition motif 2 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
      cd12638
      Location:415506
      RRM3_CELF1_2; RNA recognition motif 3 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
      TIGR01661
      Location:18502
      ELAV_HUD_SF; ELAV/HuD family splicing factor
    2. XM_009303329.3XP_009301604.1  CUGBP Elav-like family member 1 isoform X2

      UniProtKB/TrEMBL
      A0A8M3BB44
      Conserved Domains (4) summary
      cd12631
      Location:53136
      RRM1_CELF1_2_Bruno; RNA recognition motif 1 in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
      cd12634
      Location:145224
      RRM2_CELF1_2; RNA recognition motif 2 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
      cd12638
      Location:453544
      RRM3_CELF1_2; RNA recognition motif 3 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
      TIGR01661
      Location:56540
      ELAV_HUD_SF; ELAV/HuD family splicing factor
    3. XM_005168999.4XP_005169056.1  CUGBP Elav-like family member 1 isoform X14

      UniProtKB/TrEMBL
      A0A8M2BGA3
      Conserved Domains (4) summary
      cd12631
      Location:53136
      RRM1_CELF1_2_Bruno; RNA recognition motif 1 in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
      cd12634
      Location:145225
      RRM2_CELF1_2; RNA recognition motif 2 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
      cd12638
      Location:426517
      RRM3_CELF1_2; RNA recognition motif 3 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
      TIGR01661
      Location:56513
      ELAV_HUD_SF; ELAV/HuD family splicing factor
    4. XM_009303335.3XP_009301610.1  CUGBP Elav-like family member 1 isoform X10

      UniProtKB/TrEMBL
      A0A8M3AUD4
      Conserved Domains (4) summary
      cd12631
      Location:53136
      RRM1_CELF1_2_Bruno; RNA recognition motif 1 in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
      cd12634
      Location:145225
      RRM2_CELF1_2; RNA recognition motif 2 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
      cd12638
      Location:434525
      RRM3_CELF1_2; RNA recognition motif 3 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
      TIGR01661
      Location:56521
      ELAV_HUD_SF; ELAV/HuD family splicing factor
    5. XM_009303332.3XP_009301607.1  CUGBP Elav-like family member 1 isoform X4

      UniProtKB/TrEMBL
      A0A8M3B1C3
      Conserved Domains (4) summary
      cd12631
      Location:53136
      RRM1_CELF1_2_Bruno; RNA recognition motif 1 in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
      cd12634
      Location:145225
      RRM2_CELF1_2; RNA recognition motif 2 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
      cd12638
      Location:450541
      RRM3_CELF1_2; RNA recognition motif 3 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
      TIGR01661
      Location:56537
      ELAV_HUD_SF; ELAV/HuD family splicing factor
    6. XM_005168997.4XP_005169054.1  CUGBP Elav-like family member 1 isoform X12

      UniProtKB/TrEMBL
      A0A8M2BGC2
      Conserved Domains (4) summary
      cd12631
      Location:53136
      RRM1_CELF1_2_Bruno; RNA recognition motif 1 in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
      cd12634
      Location:145225
      RRM2_CELF1_2; RNA recognition motif 2 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
      cd12638
      Location:430521
      RRM3_CELF1_2; RNA recognition motif 3 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
      TIGR01661
      Location:56517
      ELAV_HUD_SF; ELAV/HuD family splicing factor
    7. XM_009303334.3XP_009301609.1  CUGBP Elav-like family member 1 isoform X9

      UniProtKB/TrEMBL
      A0A8M3BB48
      Conserved Domains (4) summary
      cd12631
      Location:53136
      RRM1_CELF1_2_Bruno; RNA recognition motif 1 in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
      cd12634
      Location:145225
      RRM2_CELF1_2; RNA recognition motif 2 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
      cd12638
      Location:437528
      RRM3_CELF1_2; RNA recognition motif 3 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
      TIGR01661
      Location:56524
      ELAV_HUD_SF; ELAV/HuD family splicing factor
    8. XM_005168996.4XP_005169053.1  CUGBP Elav-like family member 1 isoform X11

      UniProtKB/TrEMBL
      A0A8M2BGB8
      Conserved Domains (4) summary
      cd12631
      Location:53136
      RRM1_CELF1_2_Bruno; RNA recognition motif 1 in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
      cd12634
      Location:145225
      RRM2_CELF1_2; RNA recognition motif 2 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
      cd12638
      Location:431522
      RRM3_CELF1_2; RNA recognition motif 3 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
      TIGR01661
      Location:56518
      ELAV_HUD_SF; ELAV/HuD family splicing factor
    9. XM_009303333.3XP_009301608.1  CUGBP Elav-like family member 1 isoform X8

      UniProtKB/TrEMBL
      A0A8M3AUE5
      Conserved Domains (4) summary
      cd12631
      Location:53136
      RRM1_CELF1_2_Bruno; RNA recognition motif 1 in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
      cd12634
      Location:145225
      RRM2_CELF1_2; RNA recognition motif 2 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
      cd12638
      Location:438529
      RRM3_CELF1_2; RNA recognition motif 3 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
      TIGR01661
      Location:56525
      ELAV_HUD_SF; ELAV/HuD family splicing factor
    10. XM_009303331.3XP_009301606.1  CUGBP Elav-like family member 1 isoform X3

      UniProtKB/TrEMBL
      A0A8M3B487
      Conserved Domains (4) summary
      cd12631
      Location:53136
      RRM1_CELF1_2_Bruno; RNA recognition motif 1 in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
      cd12634
      Location:145225
      RRM2_CELF1_2; RNA recognition motif 2 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
      cd12638
      Location:453544
      RRM3_CELF1_2; RNA recognition motif 3 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
      TIGR01661
      Location:56540
      ELAV_HUD_SF; ELAV/HuD family splicing factor
    11. XM_009303328.3XP_009301603.1  CUGBP Elav-like family member 1 isoform X1

      See identical proteins and their annotated locations for XP_009301603.1

      UniProtKB/TrEMBL
      A0A8M3AUE0
      Conserved Domains (4) summary
      cd12631
      Location:53136
      RRM1_CELF1_2_Bruno; RNA recognition motif 1 in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
      cd12634
      Location:145225
      RRM2_CELF1_2; RNA recognition motif 2 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
      cd12638
      Location:454545
      RRM3_CELF1_2; RNA recognition motif 3 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
      TIGR01661
      Location:56541
      ELAV_HUD_SF; ELAV/HuD family splicing factor
    12. XM_009303327.3XP_009301602.1  CUGBP Elav-like family member 1 isoform X1

      See identical proteins and their annotated locations for XP_009301602.1

      UniProtKB/TrEMBL
      A0A8M3AUE0
      Conserved Domains (4) summary
      cd12631
      Location:53136
      RRM1_CELF1_2_Bruno; RNA recognition motif 1 in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
      cd12634
      Location:145225
      RRM2_CELF1_2; RNA recognition motif 2 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
      cd12638
      Location:454545
      RRM3_CELF1_2; RNA recognition motif 3 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
      TIGR01661
      Location:56541
      ELAV_HUD_SF; ELAV/HuD family splicing factor
    13. XM_009303338.2XP_009301613.1  CUGBP Elav-like family member 1 isoform X19

      UniProtKB/TrEMBL
      A0A8M3AUE9
      Conserved Domains (4) summary
      cd12631
      Location:1598
      RRM1_CELF1_2_Bruno; RNA recognition motif 1 in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
      cd12634
      Location:107187
      RRM2_CELF1_2; RNA recognition motif 2 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
      cd12638
      Location:412503
      RRM3_CELF1_2; RNA recognition motif 3 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
      TIGR01661
      Location:18499
      ELAV_HUD_SF; ELAV/HuD family splicing factor
    14. XM_009303336.2XP_009301611.1  CUGBP Elav-like family member 1 isoform X17

      UniProtKB/TrEMBL
      A0A8M3B493
      Conserved Domains (4) summary
      cd12631
      Location:1598
      RRM1_CELF1_2_Bruno; RNA recognition motif 1 in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
      cd12634
      Location:107187
      RRM2_CELF1_2; RNA recognition motif 2 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
      cd12638
      Location:416507
      RRM3_CELF1_2; RNA recognition motif 3 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
      TIGR01661
      Location:18503
      ELAV_HUD_SF; ELAV/HuD family splicing factor
    15. XM_005168998.3XP_005169055.1  CUGBP Elav-like family member 1 isoform X13

      UniProtKB/TrEMBL
      A0A8M2BGX4
      Conserved Domains (4) summary
      cd12631
      Location:53136
      RRM1_CELF1_2_Bruno; RNA recognition motif 1 in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
      cd12634
      Location:145225
      RRM2_CELF1_2; RNA recognition motif 2 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
      cd12638
      Location:427518
      RRM3_CELF1_2; RNA recognition motif 3 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
      TIGR01661
      Location:56514
      ELAV_HUD_SF; ELAV/HuD family splicing factor
    16. XM_005168994.3XP_005169051.1  CUGBP Elav-like family member 1 isoform X6

      UniProtKB/TrEMBL
      A0A8M2BGA2
      Conserved Domains (4) summary
      cd12631
      Location:53136
      RRM1_CELF1_2_Bruno; RNA recognition motif 1 in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
      cd12634
      Location:145225
      RRM2_CELF1_2; RNA recognition motif 2 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
      cd12638
      Location:443534
      RRM3_CELF1_2; RNA recognition motif 3 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
      TIGR01661
      Location:56530
      ELAV_HUD_SF; ELAV/HuD family splicing factor
    17. XM_005168991.3XP_005169048.1  CUGBP Elav-like family member 1 isoform X5

      UniProtKB/TrEMBL
      A0A8M2BGA1
      Conserved Domains (4) summary
      cd12631
      Location:53136
      RRM1_CELF1_2_Bruno; RNA recognition motif 1 in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
      cd12634
      Location:145225
      RRM2_CELF1_2; RNA recognition motif 2 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
      cd12638
      Location:447538
      RRM3_CELF1_2; RNA recognition motif 3 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
      TIGR01661
      Location:56534
      ELAV_HUD_SF; ELAV/HuD family splicing factor
    18. XM_021477598.1XP_021333273.1  CUGBP Elav-like family member 1 isoform X16

      UniProtKB/TrEMBL
      A0A8M9Q1S9
      Conserved Domains (3) summary
      cd12631
      Location:42125
      RRM1_CELF1_2_Bruno; RNA recognition motif 1 in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
      cd12634
      Location:134214
      RRM2_CELF1_2; RNA recognition motif 2 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
      cd12638
      Location:419510
      RRM3_CELF1_2; RNA recognition motif 3 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    19. XM_021477595.1XP_021333270.1  CUGBP Elav-like family member 1 isoform X7

      UniProtKB/TrEMBL
      A0A8M9QH64
      Conserved Domains (3) summary
      cd12631
      Location:42125
      RRM1_CELF1_2_Bruno; RNA recognition motif 1 in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
      cd12634
      Location:134214
      RRM2_CELF1_2; RNA recognition motif 2 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
      cd12638
      Location:443534
      RRM3_CELF1_2; RNA recognition motif 3 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
    20. XM_021477597.1XP_021333272.1  CUGBP Elav-like family member 1 isoform X15

      UniProtKB/TrEMBL
      A0A8M9PP42
      Conserved Domains (3) summary
      cd12631
      Location:42125
      RRM1_CELF1_2_Bruno; RNA recognition motif 1 in CUGBP Elav-like family member CELF-1, CELF-2, Drosophila melanogaster Bruno protein and similar proteins
      cd12634
      Location:134214
      RRM2_CELF1_2; RNA recognition motif 2 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins
      cd12638
      Location:420511
      RRM3_CELF1_2; RNA recognition motif 3 in CUGBP Elav-like family member CELF-1, CELF-2 and similar proteins