U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    Lenep lens epithelial protein [ Mus musculus (house mouse) ]

    Gene ID: 57275, updated on 5-Mar-2024

    Summary

    Official Symbol
    Lenepprovided by MGI
    Official Full Name
    lens epithelial proteinprovided by MGI
    Primary source
    MGI:MGI:1930020
    See related
    Ensembl:ENSMUSG00000078173 AllianceGenome:MGI:1930020
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Lep503
    Summary
    Predicted to be located in cytoplasm. Orthologous to human LENEP (lens epithelial protein). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in CNS E14 (RPKM 8.8), cerebellum adult (RPKM 7.7) and 28 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Lenep in Genome Data Viewer
    Location:
    3 F1; 3 39.1 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (89309203..89309957, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (89401896..89402650, complement)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene DC-STAMP domain containing 1 Neighboring gene DC-STAMP domain containing 2 Neighboring gene STARR-seq mESC enhancer starr_08235 Neighboring gene zinc finger and BTB domain containing 7B Neighboring gene STARR-seq mESC enhancer starr_08237 Neighboring gene STARR-positive B cell enhancer ABC_E3446 Neighboring gene predicted gene 15417 Neighboring gene flavin adenine dinucleotide synthetase 1 Neighboring gene STARR-positive B cell enhancer ABC_E70 Neighboring gene STARR-seq mESC enhancer starr_08239 Neighboring gene CDC28 protein kinase 1b

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Potential readthrough

    Included gene: Flad1

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    involved_in multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm ISS
    Inferred from Sequence or Structural Similarity
    more info
    PubMed 

    General protein information

    Preferred Names
    lens epithelial cell protein LEP503
    Names
    lens epithelial protein 503

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_020517.4NP_065263.1  lens epithelial cell protein LEP503

      See identical proteins and their annotated locations for NP_065263.1

      Status: VALIDATED

      Source sequence(s)
      CK627663, EL956268
      Consensus CDS
      CCDS38491.1
      UniProtKB/Swiss-Prot
      Q9WVB6
      UniProtKB/TrEMBL
      Q543C4
      Related
      ENSMUSP00000052968.5, ENSMUST00000057431.6
      Conserved Domains (1) summary
      pfam15221
      Location:161
      LEP503; Lens epithelial cell protein LEP503

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      89309203..89309957 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)