HMGB2 high mobility group B2 [Arabidopsis thaliana (thale cress)] - Gene

Summary

Gene symbol: HMGB2
Gene description: high mobility group B2
Primary source: Araport:AT1G20693
Locus tag: AT1G20693
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: high mobility group B2; HIGH MOBILITY GROUP BETA 1; HMG BETA 1; NFD02; NFD2; NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02; NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2
Summary: Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha.
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Chromosome 1 - NC_003070.9 Genomic Context describing neighboring genes

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

NM_001035997.1

NM_001084100.1

NM_101920.3

Function	Evidence Code	Pubs
enables DNA binding	IDA Inferred from Direct Assay more info	PubMed
enables DNA binding	ISS Inferred from Sequence or Structural Similarity more info	PubMed
enables DNA-binding transcription factor activity	ISS Inferred from Sequence or Structural Similarity more info	PubMed
enables chromatin binding	TAS Traceable Author Statement more info	PubMed
enables structural constituent of chromatin	TAS Traceable Author Statement more info	PubMed

Component	Evidence Code	Pubs
part_of chromatin	TAS Traceable Author Statement more info	PubMed
located_in nucleus	HDA more info	PubMed
located_in nucleus	IDA Inferred from Direct Assay more info	PubMed
located_in nucleus	ISM Inferred from Sequence Model more info

NP_001031074.1

high mobility group B2 (HMGB2); FUNCTIONS IN: chromatin binding, structural constituent of chromatin, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910), High mobility group, HMG1/HMG2, subgroup (InterPro:IPR000135); BEST Arabidopsis thaliana protein match is: high mobility group B3 (TAIR:AT1G20696.3); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NP_001077569.1

high mobility group B2 (HMGB2); FUNCTIONS IN: chromatin binding, structural constituent of chromatin, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910), High mobility group, HMG1/HMG2, subgroup (InterPro:IPR000135); BEST Arabidopsis thaliana protein match is: high mobility group B3 (TAIR:AT1G20696.3); Has 7109 Blast hits to 6235 proteins in 712 species: Archae - 0; Bacteria - 5; Metazoa - 5360; Fungi - 490; Plants - 580; Viruses - 7; Other Eukaryotes - 667 (source: NCBI BLink).

NP_564123.1

high mobility group B2 (HMGB2); FUNCTIONS IN: chromatin binding, structural constituent of chromatin, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: chromatin assembly or disassembly; LOCATED IN: chromatin; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910), High mobility group, HMG1/HMG2, subgroup (InterPro:IPR000135); BEST Arabidopsis thaliana protein match is: high mobility group B3 (TAIR:AT1G20696.3); Has 7209 Blast hits to 6316 proteins in 714 species: Archae - 2; Bacteria - 5; Metazoa - 5374; Fungi - 532; Plants - 604; Viruses - 9; Other Eukaryotes - 683 (source: NCBI BLink).