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    Fam25a family with sequence similarity 25, member A [ Rattus norvegicus (Norway rat) ]

    Gene ID: 684972, updated on 13-Apr-2024

    Summary

    Official Symbol
    Fam25aprovided by RGD
    Official Full Name
    family with sequence similarity 25, member Aprovided by RGD
    Primary source
    RGD:1584388
    See related
    Ensembl:ENSRNOG00000055025 AllianceGenome:RGD:1584388
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to several human genes including FAM25BP (family with sequence similarity 25 member B, pseudogene). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Lung (RPKM 84.6), Kidney (RPKM 19.6) and 4 other tissues See more
    Orthologs
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    Genomic context

    Location:
    16p15
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 16 NC_086034.1 (9686922..9690728, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 16 NC_051351.1 (9680668..9684474, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (10702264..10706073, complement)

    Chromosome 16 - NC_086034.1Genomic Context describing neighboring genes Neighboring gene shieldin complex subunit 2 Neighboring gene small nucleolar RNA SNORA15 Neighboring gene glutamate dehydrogenase 1 Neighboring gene synuclein, gamma Neighboring gene multimerin 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001134849.1NP_001128321.1  protein FAM25A

      See identical proteins and their annotated locations for NP_001128321.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000016
      UniProtKB/TrEMBL
      A0A0G2K0T8, A6KFS3
      Related
      ENSRNOP00000071578.1, ENSRNOT00000089114.2
      Conserved Domains (1) summary
      pfam15825
      Location:2488
      FAM25; FAM25 family

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086034.1 Reference GRCr8

      Range
      9686922..9690728 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)