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    Prr22 proline rich 22 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 680177, updated on 3-Apr-2024

    Summary

    Official Symbol
    Prr22provided by RGD
    Official Full Name
    proline rich 22provided by RGD
    Primary source
    RGD:1595447
    See related
    AllianceGenome:RGD:1595447
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human PRR22 (proline rich 22). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Testes (RPKM 91.7), Lung (RPKM 8.1) and 7 other tissues See more
    Orthologs
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    Genomic context

    Location:
    9q11
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (1686295..1688129)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (1599169..1601003)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (10286755..10289340, complement)

    Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene neurturin Neighboring gene dihydrouridine synthase 3-like Neighboring gene regulatory factor X2 Neighboring gene uncharacterized LOC120094598 Neighboring gene myosin light chain 12B, pseudogene 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001126375.1NP_001119847.2  proline-rich protein 22 isoform 2

      Status: VALIDATED

      Source sequence(s)
      BC161872
      UniProtKB/TrEMBL
      B1WBS8
      Conserved Domains (1) summary
      pfam15776
      Location:43402
      PRR22; Proline-rich protein family 22
    2. NM_001399121.1NP_001386050.1  proline-rich protein 22 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000009
      Conserved Domains (1) summary
      pfam15776
      Location:58417
      PRR22; Proline-rich protein family 22

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086027.1 Reference GRCr8

      Range
      1686295..1688129
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039084199.2XP_038940127.1  proline-rich protein 22 isoform X1

      UniProtKB/TrEMBL
      M0RAI3
      Conserved Domains (1) summary
      pfam15776
      Location:1355
      PRR22; Proline-rich protein family 22