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    RPAIN RPA interacting protein [ Bos taurus (cattle) ]

    Gene ID: 618324, updated on 5-Mar-2024

    Summary

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    Official Symbol
    RPAINprovided by VGNC
    Official Full Name
    RPA interacting proteinprovided by VGNC
    Primary source
    VGNC:VGNC:34097
    See related
    BGD:BT19806; Ensembl:ENSBTAG00000025149
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 19
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 19 NC_037346.1 (26120437..26127916, complement)

    Chromosome 19 - NC_037346.1Genomic Context describing neighboring genes Neighboring gene DEAH-box helicase 33 Neighboring gene complement C1q binding protein Neighboring gene microRNA mir-199c Neighboring gene nucleoporin 88 Neighboring gene rabaptin, RAB GTPase binding effector protein 1 Neighboring gene transfer RNA glutamic acid (anticodon CUC)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037346.1 Chromosome 19 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC133584

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in protein import into nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in PML body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RPA-interacting protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001076500.2 → NP_001069968.1  RPA-interacting protein

      See identical proteins and their annotated locations for NP_001069968.1

      Status: PROVISIONAL

      Source sequence(s)
      BC109737
      UniProtKB/TrEMBL
      Q2TBS0
      Related
      ENSBTAP00000035090.4, ENSBTAT00000035212.5
      Conserved Domains (3) summary
      pfam14766
      Location:8 → 46
      RPA_interact_N; Replication protein A interacting N-terminal
      pfam14767
      Location:59 → 124
      RPA_interact_M; Replication protein A interacting middle
      pfam14768
      Location:137 → 217
      RPA_interact_C; Replication protein A interacting C-terminal

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037346.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      26120437..26127916 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059878273.1 → XP_059734256.1  RPA-interacting protein isoform X1

    RNA

    1. XR_813193.4 RNA Sequence

      Related
      ENSBTAT00000122151.1
    Nucleotide Protein Strain
    Heading Accession and Version

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