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    LIMD1 LIM domain containing 1 [ Bos taurus (cattle) ]

    Gene ID: 617525, updated on 5-Mar-2024

    Summary

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    Official Symbol
    LIMD1provided by VGNC
    Official Full Name
    LIM domain containing 1provided by VGNC
    Primary source
    VGNC:VGNC:30888
    See related
    BGD:BT11038; Ensembl:ENSBTAG00000026097
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 22
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 22 NC_037349.1 (53629447..53708510, complement)

    Chromosome 22 - NC_037349.1Genomic Context describing neighboring genes Neighboring gene SAC1 like phosphatidylinositide phosphatase Neighboring gene transfer RNA arginine (anticodon ACG) Neighboring gene leucyl-tRNA synthetase 2, mitochondrial Neighboring gene uncharacterized LOC101907967

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037349.1 Chromosome 22 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The genome sequence of taurine cattle: a window to ruminant biology and evolution. Bovine Genome Sequencing and Analysis Consortium, et al. Science, 2009 Apr 24. PMID 19390049, Free PMC Article
    2. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transcription corepressor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of hippo signaling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of miRNA-mediated gene silencing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to hypoxia IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in P-body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in adherens junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription regulator complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LIM domain-containing protein 1
    Names
    LIM domains containing 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001193163.1 → NP_001180092.1  LIM domain-containing protein 1

      See identical proteins and their annotated locations for NP_001180092.1

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000022
      UniProtKB/Swiss-Prot
      G5E5X0
      Related
      ENSBTAP00000036851.2, ENSBTAT00000037007.4
      Conserved Domains (4) summary
      cd09352
      Location:470 → 523
      LIM1_Ajuba_like; The first LIM domain of Ajuba-like proteins
      cd09355
      Location:535 → 587
      LIM2_Ajuba_like; The second LIM domain of Ajuba-like proteins
      cd09438
      Location:595 → 656
      LIM3_Ajuba_like; The third LIM domain of Ajuba-like proteins
      PHA03247
      Location:72 → 462
      PHA03247; large tegument protein UL36; Provisional

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037349.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      53629447..53708510 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059879879.1 → XP_059735862.1  LIM domain-containing protein 1 isoform X1

    2. XM_059879880.1 → XP_059735863.1  LIM domain-containing protein 1 isoform X2

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    G5E5X0.1 GenPept UniProtKB/Swiss-Prot:G5E5X0

    Gene LinkOut

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