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    LOC563710 leucine-rich repeat transmembrane neuronal protein 4 [ Danio rerio (zebrafish) ]

    Gene ID: 563710, updated on 27-Mar-2024

    Summary

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    Gene symbol
    LOC563710
    Gene description
    leucine-rich repeat transmembrane neuronal protein 4
    See related
    Ensembl:ENSDARG00000078839
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Orthologs
    all
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    Genomic context

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    Location:
    chromosome: 10
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (18291418..18468275, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (18333816..18510714, complement)

    Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1 regulatory subunit 3C2, duplicate a Neighboring gene uncharacterized LOC101885123 Neighboring gene uncharacterized LOC795389 Neighboring gene uncharacterized LOC103911738

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    leucine-rich repeat transmembrane neuronal protein 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007121.7 Reference GRCz11 Primary Assembly

      Range
      18291418..18468275 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_687067.8 → XP_692159.4  leucine-rich repeat transmembrane neuronal protein 4

      UniProtKB/TrEMBL
      A0A2R8Q9L0, A0A8N7UR34
      Related
      ENSDARP00000146705.1, ENSDART00000183302.1
      Conserved Domains (3) summary
      cd00116
      Location:81 → 286
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:60 → 83
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:130 → 190
      LRR_8; Leucine rich repeat
    Nucleotide Protein
    Heading Accession and Version

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