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    TRIM24 tripartite motif containing 24 [ Bos taurus (cattle) ]

    Gene ID: 537246, updated on 5-Mar-2024

    Summary

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    Official Symbol
    TRIM24provided by VGNC
    Official Full Name
    tripartite motif containing 24provided by VGNC
    Primary source
    VGNC:VGNC:36321
    See related
    BGD:BT23343; Ensembl:ENSBTAG00000002431
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 4 NC_037331.1 (102169730..102285948)

    Chromosome 4 - NC_037331.1Genomic Context describing neighboring genes Neighboring gene cAMP responsive element binding protein 3 like 2 Neighboring gene microRNA mir-12013 Neighboring gene aldo-keto reductase family 1 member D1 Neighboring gene uncharacterized LOC132345133 Neighboring gene SVOP like Neighboring gene ATPase H+ transporting V0 subunit a4 Neighboring gene transmembrane protein 213

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037331.1 Chromosome 4 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription intermediary factor 1-alpha
    XP_002687040.1
    XP_002687041.1
    XP_024846938.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037331.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      102169730..102285948
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002686994.5 → XP_002687040.1  transcription intermediary factor 1-alpha isoform X1

      See identical proteins and their annotated locations for XP_002687040.1

      UniProtKB/TrEMBL
      A0A3Q1LM29, F1MP49
      Related
      ENSBTAP00000060907.2, ENSBTAT00000070598.2
      Conserved Domains (6) summary
      cd05502
      Location:900 → 1007
      Bromo_tif1_like; Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or ...
      smart00502
      Location:266 → 392
      BBC; B-Box C-terminal domain
      smart00336
      Location:158 → 194
      BBOX; B-Box-type zinc finger
      smart00184
      Location:56 → 82
      RING; Ring finger
      cd00021
      Location:221 → 259
      BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
      cd15622
      Location:828 → 870
      PHD_TIF1alpha; PHD finger found in transcription intermediary factor 1-alpha (TIF1-alpha)

    2. XM_024991170.2 → XP_024846938.1  transcription intermediary factor 1-alpha isoform X3

      UniProtKB/TrEMBL
      A0A3Q1LM29
      Related
      ENSBTAP00000063227.2, ENSBTAT00000071186.2
      Conserved Domains (7) summary
      cd05502
      Location:842 → 949
      Bromo_tif1_like; Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or ...
      smart00502
      Location:266 → 392
      BBC; B-Box C-terminal domain
      smart00336
      Location:158 → 194
      BBOX; B-Box-type zinc finger
      cd00021
      Location:221 → 259
      BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
      cd15622
      Location:770 → 812
      PHD_TIF1alpha; PHD finger found in transcription intermediary factor 1-alpha (TIF1-alpha)
      cd16764
      Location:53 → 134
      RING-HC_TIF1alpha; RING finger, HC subclass, found in transcription inknown asiary factor 1-alpha (TIF1-alpha)
      cl25764
      Location:435 → 624
      PAT1; Topoisomerase II-associated protein PAT1

    3. XM_002686995.6 → XP_002687041.1  transcription intermediary factor 1-alpha isoform X2

      See identical proteins and their annotated locations for XP_002687041.1

      UniProtKB/TrEMBL
      A0A3Q1LM29
      Conserved Domains (6) summary
      cd05502
      Location:866 → 973
      Bromo_tif1_like; Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or ...
      smart00502
      Location:266 → 392
      BBC; B-Box C-terminal domain
      smart00336
      Location:158 → 194
      BBOX; B-Box-type zinc finger
      smart00184
      Location:56 → 82
      RING; Ring finger
      cd00021
      Location:221 → 259
      BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
      cd15622
      Location:794 → 836
      PHD_TIF1alpha; PHD finger found in transcription intermediary factor 1-alpha (TIF1-alpha)
    Nucleotide Protein Strain
    Heading Accession and Version

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