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    PUM1 pumilio RNA binding family member 1 [ Bos taurus (cattle) ]

    Gene ID: 535450, updated on 3-Apr-2024

    Summary

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    Official Symbol
    PUM1provided by VGNC
    Official Full Name
    pumilio RNA binding family member 1provided by VGNC
    Primary source
    VGNC:VGNC:33569
    See related
    Ensembl:ENSBTAG00000018979
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 2 NC_037329.1 (122527999..122653986)

    Chromosome 2 - NC_037329.1Genomic Context describing neighboring genes Neighboring gene sodium/potassium transporting ATPase interacting 1 Neighboring gene uncharacterized LOC101902958 Neighboring gene small nucleolar RNA SNORD103/SNORD85 Neighboring gene small nucleolar RNA SNORD103/SNORD85 Neighboring gene small nucleolar RNA SNORD103/SNORD85 Neighboring gene transfer RNA cysteine (anticodon ACA) Neighboring gene syndecan 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037329.1 Chromosome 2 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA 3'-UTR binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in miRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of mRNA stability IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pumilio homolog 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001193123.1 → NP_001180052.1  pumilio homolog 1

      See identical proteins and their annotated locations for NP_001180052.1

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000002
      UniProtKB/TrEMBL
      E1BE82
      Conserved Domains (1) summary
      cd07920
      Location:843 → 1164
      Pumilio; Pumilio-family RNA binding domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037329.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      122527999..122653986
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005202941.5 → XP_005202998.1  pumilio homolog 1 isoform X1

      See identical proteins and their annotated locations for XP_005202998.1

      Related
      ENSBTAP00000025262.6, ENSBTAT00000025262.7
      Conserved Domains (1) summary
      cd07920
      Location:848 → 1171
      Pumilio; Pumilio-family RNA binding domain

    2. XM_005202944.5 → XP_005203001.1  pumilio homolog 1 isoform X3

      Conserved Domains (1) summary
      cd07920
      Location:848 → 1169
      Pumilio; Pumilio-family RNA binding domain

    3. XM_059875456.1 → XP_059731439.1  pumilio homolog 1 isoform X9

    4. XM_005202948.5 → XP_005203005.1  pumilio homolog 1 isoform X10

      Conserved Domains (1) summary
      cd07920
      Location:769 → 1092
      Pumilio; Pumilio-family RNA binding domain

    5. XM_010802429.4 → XP_010800731.1  pumilio homolog 1 isoform X11

      Conserved Domains (1) summary
      cd07920
      Location:769 → 1090
      Pumilio; Pumilio-family RNA binding domain

    6. XM_005202947.5 → XP_005203004.1  pumilio homolog 1 isoform X7

      Conserved Domains (1) summary
      cd07920
      Location:821 → 1144
      Pumilio; Pumilio-family RNA binding domain

    7. XM_005202945.5 → XP_005203002.1  pumilio homolog 1 isoform X4

      See identical proteins and their annotated locations for XP_005203002.1

      Conserved Domains (1) summary
      cd07920
      Location:844 → 1167
      Pumilio; Pumilio-family RNA binding domain

    8. XM_024975964.2 → XP_024831732.1  pumilio homolog 1 isoform X6

      Conserved Domains (1) summary
      cd07920
      Location:844 → 1165
      Pumilio; Pumilio-family RNA binding domain

    9. XM_024976002.2 → XP_024831770.1  pumilio homolog 1 isoform X17

      Related
      ENSBTAP00000057100.2, ENSBTAT00000074155.2
      Conserved Domains (1) summary
      cd07920
      Location:765 → 1086
      Pumilio; Pumilio-family RNA binding domain

    10. XM_024975970.2 → XP_024831738.1  pumilio homolog 1 isoform X8

      Conserved Domains (1) summary
      cd07920
      Location:817 → 1138
      Pumilio; Pumilio-family RNA binding domain

    11. XM_005202946.5 → XP_005203003.1  pumilio homolog 1 isoform X5

      See identical proteins and their annotated locations for XP_005203003.1

      Conserved Domains (1) summary
      cd07920
      Location:843 → 1166
      Pumilio; Pumilio-family RNA binding domain

    12. XM_024976005.2 → XP_024831773.1  pumilio homolog 1 isoform X18

      Conserved Domains (1) summary
      cd07920
      Location:764 → 1085
      Pumilio; Pumilio-family RNA binding domain

    13. XM_024975984.2 → XP_024831752.1  pumilio homolog 1 isoform X16

      UniProtKB/TrEMBL
      A0A3Q1M0G4
      Related
      ENSBTAP00000072590.2, ENSBTAT00000075927.2
      Conserved Domains (1) summary
      cd07920
      Location:702 → 1025
      Pumilio; Pumilio-family RNA binding domain

    14. XM_005202943.5 → XP_005203000.1  pumilio homolog 1 isoform X2

      See identical proteins and their annotated locations for XP_005203000.1

      Conserved Domains (1) summary
      cd07920
      Location:847 → 1170
      Pumilio; Pumilio-family RNA binding domain

    15. XM_005202949.5 → XP_005203006.1  pumilio homolog 1 isoform X12

      UniProtKB/TrEMBL
      A0A3Q1M0G4
      Conserved Domains (1) summary
      cd07920
      Location:752 → 1075
      Pumilio; Pumilio-family RNA binding domain

    16. XM_059875477.1 → XP_059731460.1  pumilio homolog 1 isoform X19

    17. XM_005202950.5 → XP_005203007.1  pumilio homolog 1 isoform X13

      See identical proteins and their annotated locations for XP_005203007.1

      UniProtKB/TrEMBL
      A0A3Q1M0G4, A0A3Q1NK22
      Conserved Domains (1) summary
      cd07920
      Location:747 → 1070
      Pumilio; Pumilio-family RNA binding domain

    18. XM_024976007.2 → XP_024831775.1  pumilio homolog 1 isoform X20

      UniProtKB/TrEMBL
      A0A3Q1M0G4
      Conserved Domains (1) summary
      cd07920
      Location:747 → 1068
      Pumilio; Pumilio-family RNA binding domain

    19. XM_015459546.3 → XP_015315032.1  pumilio homolog 1 isoform X21

      UniProtKB/TrEMBL
      A0A3Q1M0G4
      Conserved Domains (1) summary
      cd07920
      Location:606 → 929
      Pumilio; Pumilio-family RNA binding domain

    20. XM_024976022.2 → XP_024831790.1  pumilio homolog 1 isoform X22

      UniProtKB/TrEMBL
      A0A3Q1M0G4
      Related
      ENSBTAP00000063131.1, ENSBTAT00000068355.2
      Conserved Domains (1) summary
      cd07920
      Location:601 → 924
      Pumilio; Pumilio-family RNA binding domain

    21. XM_024975975.2 → XP_024831743.1  pumilio homolog 1 isoform X14

      Conserved Domains (1) summary
      cd07920
      Location:728 → 1051
      Pumilio; Pumilio-family RNA binding domain

    22. XM_005202942.5 → XP_005202999.1  pumilio homolog 1 isoform X1

      See identical proteins and their annotated locations for XP_005202999.1

      Conserved Domains (1) summary
      cd07920
      Location:848 → 1171
      Pumilio; Pumilio-family RNA binding domain

    23. XM_024975979.2 → XP_024831747.1  pumilio homolog 1 isoform X15

      Conserved Domains (1) summary
      cd07920
      Location:727 → 1050
      Pumilio; Pumilio-family RNA binding domain

    24. XM_024976033.2 → XP_024831801.1  pumilio homolog 1 isoform X23

      UniProtKB/TrEMBL
      A0A3Q1M0G4
      Conserved Domains (1) summary
      cd07920
      Location:513 → 836
      Pumilio; Pumilio-family RNA binding domain

    25. XM_059875482.1 → XP_059731465.1  pumilio homolog 1 isoform X23

    Nucleotide Protein Strain
    Heading Accession and Version

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