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    CNTN6 contactin 6 [ Bos taurus (cattle) ]

    Gene ID: 533402, updated on 5-Mar-2024

    Summary

    Official Symbol
    CNTN6provided by VGNC
    Official Full Name
    contactin 6provided by VGNC
    Primary source
    VGNC:VGNC:27539
    See related
    Ensembl:ENSBTAG00000003592
    Gene type
    protein coding
    RefSeq status
    INFERRED
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
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    Genomic context

    Location:
    chromosome: 22
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 22 NC_037349.1 (24943366..25263794, complement)

    Chromosome 22 - NC_037349.1Genomic Context describing neighboring genes Neighboring gene contactin 4 Neighboring gene uncharacterized LOC112443435 Neighboring gene uncharacterized LOC112443518 Neighboring gene transfer RNA cysteine (anticodon GCA) Neighboring gene poly(A) binding protein, nuclear 1-like (cytoplasmic) pseudogene Neighboring gene cell adhesion molecule L1 like

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_037349.1 Chromosome 22 Reference ARS-UCD2.0 Primary Assembly

    General gene information

    Markers

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in cell-cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    PubMed 

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001191459.2NP_001178388.1  contactin-6 precursor

      See identical proteins and their annotated locations for NP_001178388.1

      Status: INFERRED

      Source sequence(s)
      NKLS02000022
      UniProtKB/TrEMBL
      F1MXS0
      Related
      ENSBTAP00000004672.5, ENSBTAT00000004672.6
      Conserved Domains (4) summary
      smart00410
      Location:420496
      IG_like; Immunoglobulin like
      cd00063
      Location:598691
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam07679
      Location:318403
      I-set; Immunoglobulin I-set domain
      cl11960
      Location:319403
      Ig; Immunoglobulin domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037349.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      24943366..25263794 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)