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    TMC6 transmembrane channel like 6 [ Bos taurus (cattle) ]

    Gene ID: 505575, updated on 3-Apr-2024

    Summary

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    Official Symbol
    TMC6provided by VGNC
    Official Full Name
    transmembrane channel like 6provided by VGNC
    Primary source
    VGNC:VGNC:35922
    See related
    BGD:BT27628; Ensembl:ENSBTAG00000018661
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 19
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 19 NC_037346.1 (54024507..54048074)

    Chromosome 19 - NC_037346.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112442705 Neighboring gene transmembrane channel like 8 Neighboring gene microRNA mir-2348 Neighboring gene trinucleotide repeat containing adaptor 6C Neighboring gene small nucleolar RNA SNORA11

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037346.1 Chromosome 19 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC139990

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mechanosensitive monoatomic ion channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transmembrane channel-like protein 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001075208.1 → NP_001068676.1  transmembrane channel-like protein 6

      See identical proteins and their annotated locations for NP_001068676.1

      Status: PROVISIONAL

      Source sequence(s)
      BC119987
      UniProtKB/TrEMBL
      A0A3Q1LPW8, Q0VCU9
      Related
      ENSBTAP00000040210.1, ENSBTAT00000042576.2
      Conserved Domains (1) summary
      pfam07810
      Location:553 → 650
      TMC; TMC domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037346.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      54024507..54048074
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059877835.1 → XP_059733818.1  transmembrane channel-like protein 6 isoform X1

    2. XM_024979767.2 → XP_024835535.1  transmembrane channel-like protein 6 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1LPW8
      Conserved Domains (1) summary
      pfam07810
      Location:549 → 655
      TMC; TMC domain

    3. XM_024979766.2 → XP_024835534.1  transmembrane channel-like protein 6 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1LPW8
      Conserved Domains (1) summary
      pfam07810
      Location:549 → 655
      TMC; TMC domain

    4. XM_024979772.2 → XP_024835540.1  transmembrane channel-like protein 6 isoform X8

      UniProtKB/TrEMBL
      A0A3Q1LPW8
      Conserved Domains (1) summary
      pfam07810
      Location:549 → 655
      TMC; TMC domain

    5. XM_024979769.2 → XP_024835537.1  transmembrane channel-like protein 6 isoform X2

      UniProtKB/TrEMBL
      A0A3Q1LPW8, A0A3Q1MA74
      Related
      ENSBTAP00000070902.2, ENSBTAT00000074476.2
      Conserved Domains (1) summary
      pfam07810
      Location:548 → 654
      TMC; TMC domain

    6. XM_005221163.5 → XP_005221220.1  transmembrane channel-like protein 6 isoform X9

      See identical proteins and their annotated locations for XP_005221220.1

      UniProtKB/TrEMBL
      A0A3Q1LPW8, Q0VCU9
      Conserved Domains (1) summary
      pfam07810
      Location:553 → 650
      TMC; TMC domain

    7. XM_024979773.2 → XP_024835541.1  transmembrane channel-like protein 6 isoform X10

      UniProtKB/TrEMBL
      A0A3Q1LPW8
      Conserved Domains (1) summary
      pfam07810
      Location:463 → 569
      TMC; TMC domain

    8. XM_024979770.2 → XP_024835538.1  transmembrane channel-like protein 6 isoform X3

      UniProtKB/TrEMBL
      A0A3Q1LPW8
      Conserved Domains (1) summary
      pfam07810
      Location:548 → 654
      TMC; TMC domain

    9. XM_059877836.1 → XP_059733819.1  transmembrane channel-like protein 6 isoform X1

    10. XM_024979771.2 → XP_024835539.1  transmembrane channel-like protein 6 isoform X4

      UniProtKB/TrEMBL
      A0A3Q1LPW8
      Conserved Domains (1) summary
      pfam07810
      Location:549 → 655
      TMC; TMC domain

    11. XM_010816516.4 → XP_010814818.1  transmembrane channel-like protein 6 isoform X5

      UniProtKB/TrEMBL
      A0A3Q1LPW8, A0A3Q1MFD8
      Conserved Domains (1) summary
      pfam07810
      Location:553 → 650
      TMC; TMC domain

    12. XM_010816518.4 → XP_010814820.1  transmembrane channel-like protein 6 isoform X6

      UniProtKB/TrEMBL
      A0A3Q1LPW8
      Related
      ENSBTAP00000069241.2, ENSBTAT00000075955.2
      Conserved Domains (1) summary
      pfam07810
      Location:552 → 649
      TMC; TMC domain

    13. XM_059877838.1 → XP_059733821.1  transmembrane channel-like protein 6 isoform X7

    14. XM_024979768.2 → XP_024835536.1  transmembrane channel-like protein 6 isoform X1

      UniProtKB/TrEMBL
      A0A3Q1LPW8
      Conserved Domains (1) summary
      pfam07810
      Location:549 → 655
      TMC; TMC domain

    15. XM_059877837.1 → XP_059733820.1  transmembrane channel-like protein 6 isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version

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