U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    CHL1 cell adhesion molecule L1 like [ Bos taurus (cattle) ]

    Gene ID: 504415, updated on 3-Apr-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    CHL1provided by VGNC
    Official Full Name
    cell adhesion molecule L1 likeprovided by VGNC
    Primary source
    VGNC:VGNC:27296
    See related
    BGD:BT19062; Ensembl:ENSBTAG00000002471
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 22
    Exon count:
    30
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 22 NC_037349.1 (25982413..26207536, complement)

    Chromosome 22 - NC_037349.1Genomic Context describing neighboring genes Neighboring gene contactin 6 Neighboring gene transfer RNA cysteine (anticodon GCA) Neighboring gene poly(A) binding protein, nuclear 1-like (cytoplasmic) pseudogene Neighboring gene uncharacterized LOC132343465 Neighboring gene U6 spliceosomal RNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_037349.1 Chromosome 22 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell-cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in axon IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    neural cell adhesion molecule L1-like protein
    Names
    cell adhesion molecule with homology to L1CAM (close homolog of L1)

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001205541.3 → NP_001192470.3  neural cell adhesion molecule L1-like protein precursor

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000022
      UniProtKB/TrEMBL
      A0A3Q1MII1, F1MW33
      Related
      ENSBTAP00000069623.2, ENSBTAT00000082399.2
      Conserved Domains (8) summary
      cd05845
      Location:129 → 223
      Ig2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins
      cd00063
      Location:628 → 717
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:731 → 812
      fn3; Fibronectin type III domain
      pfam13882
      Location:1121 → 1206
      Bravo_FIGEY; Bravo-like intracellular region
      cd00096
      Location:457 → 524
      Ig; Immunoglobulin domain
      cd04978
      Location:361 → 435
      Ig4_L1-NrCAM_like; Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)
      cd05731
      Location:274 → 344
      Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
      cl11960
      Location:53 → 126
      Ig; Immunoglobulin domain

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037349.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      25982413..26207536 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024982443.2 → XP_024838211.1  neural cell adhesion molecule L1-like protein isoform X2

      UniProtKB/TrEMBL
      A0A3Q1MII1, A0A3Q1NDP4
      Related
      ENSBTAP00000068848.2, ENSBTAT00000087005.2
      Conserved Domains (8) summary
      cd05845
      Location:129 → 223
      Ig2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins
      cd00063
      Location:612 → 701
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:715 → 796
      fn3; Fibronectin type III domain
      pfam13882
      Location:1105 → 1190
      Bravo_FIGEY; Bravo-like intracellular region
      cd00096
      Location:441 → 508
      Ig; Immunoglobulin domain
      cd04978
      Location:345 → 419
      Ig4_L1-NrCAM_like; Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)
      cd05731
      Location:258 → 328
      Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
      cl11960
      Location:53 → 126
      Ig; Immunoglobulin domain

    2. XM_059879495.1 → XP_059735478.1  neural cell adhesion molecule L1-like protein isoform X3

      UniProtKB/TrEMBL
      A0A3Q1M2M5

    3. XM_010817612.4 → XP_010815914.2  neural cell adhesion molecule L1-like protein isoform X1

      UniProtKB/TrEMBL
      A0A3Q1MII1, F1MW33
      Conserved Domains (8) summary
      cd05845
      Location:129 → 223
      Ig2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins
      cd00063
      Location:628 → 717
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:731 → 812
      fn3; Fibronectin type III domain
      pfam13882
      Location:1121 → 1206
      Bravo_FIGEY; Bravo-like intracellular region
      cd00096
      Location:457 → 524
      Ig; Immunoglobulin domain
      cd04978
      Location:361 → 435
      Ig4_L1-NrCAM_like; Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)
      cd05731
      Location:274 → 344
      Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
      cl11960
      Location:53 → 126
      Ig; Immunoglobulin domain

    4. XM_010817611.4 → XP_010815913.2  neural cell adhesion molecule L1-like protein isoform X1

      UniProtKB/TrEMBL
      A0A3Q1MII1, F1MW33
      Conserved Domains (8) summary
      cd05845
      Location:129 → 223
      Ig2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins
      cd00063
      Location:628 → 717
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:731 → 812
      fn3; Fibronectin type III domain
      pfam13882
      Location:1121 → 1206
      Bravo_FIGEY; Bravo-like intracellular region
      cd00096
      Location:457 → 524
      Ig; Immunoglobulin domain
      cd04978
      Location:361 → 435
      Ig4_L1-NrCAM_like; Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)
      cd05731
      Location:274 → 344
      Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
      cl11960
      Location:53 → 126
      Ig; Immunoglobulin domain

    5. XM_005222632.5 → XP_005222689.2  neural cell adhesion molecule L1-like protein isoform X1

      UniProtKB/TrEMBL
      A0A3Q1MII1, F1MW33
      Conserved Domains (8) summary
      cd05845
      Location:129 → 223
      Ig2_L1-CAM_like; Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins
      cd00063
      Location:628 → 717
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:731 → 812
      fn3; Fibronectin type III domain
      pfam13882
      Location:1121 → 1206
      Bravo_FIGEY; Bravo-like intracellular region
      cd00096
      Location:457 → 524
      Ig; Immunoglobulin domain
      cd04978
      Location:361 → 435
      Ig4_L1-NrCAM_like; Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)
      cd05731
      Location:274 → 344
      Ig3_L1-CAM_like; Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)
      cl11960
      Location:53 → 126
      Ig; Immunoglobulin domain
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Miscellaneous