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    ARID1A AT-rich interaction domain 1A [ Canis lupus familiaris (dog) ]

    Gene ID: 487352, updated on 5-Mar-2024

    Summary

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    Official Symbol
    ARID1Aprovided by VGNC
    Official Full Name
    AT-rich interaction domain 1Aprovided by VGNC
    Primary source
    VGNC:VGNC:38093
    See related
    Ensembl:ENSCAFG00845011619
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 2 NC_051806.1 (73894794..73964327, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 2 NC_006584.4 (69909026..69978542, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 2 NC_049223.1 (72728646..72798165, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 2 NC_049262.1 (70719680..70789191, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 2 NC_049743.1 (71725226..71794735, complement)

    Chromosome 2 - NC_051806.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119870390 Neighboring gene phosphatidylinositol glycan anchor biosynthesis class V Neighboring gene uncharacterized LOC119870050 Neighboring gene uncharacterized LOC102157349 Neighboring gene ribosomal protein S6 kinase A1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleosome binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SWI/SNF complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of brahma complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of nBAF complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AT-rich interactive domain-containing protein 1A; LOW QUALITY PROTEIN: AT-rich interactive domain-containing protein 1A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051806.1 Reference ROS_Cfam_1.0

      Range
      73894794..73964327 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038659748.1 → XP_038515676.1  AT-rich interactive domain-containing protein 1A isoform X2

      UniProtKB/TrEMBL
      A0A8C0RXD1
      Conserved Domains (4) summary
      TIGR01628
      Location:373 → 470
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      pfam09606
      Location:678 → 949
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      cd16876
      Location:1020 → 1112
      ARID_ARID1A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1A (ARID1A) and similar proteins
      pfam12031
      Location:1975 → 2230
      BAF250_C; SWI/SNF-like complex subunit BAF250/Osa

    2. XM_038659746.1 → XP_038515674.1  AT-rich interactive domain-containing protein 1A isoform X1

      UniProtKB/TrEMBL
      A0A8C0RXD1
      Conserved Domains (4) summary
      TIGR01628
      Location:373 → 470
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      pfam09606
      Location:678 → 949
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      cd16876
      Location:1020 → 1112
      ARID_ARID1A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1A (ARID1A) and similar proteins
      pfam12031
      Location:1976 → 2231
      BAF250_C; SWI/SNF-like complex subunit BAF250/Osa

    3. XM_038659751.1 → XP_038515679.1  AT-rich interactive domain-containing protein 1A isoform X4

      UniProtKB/TrEMBL
      A0A8I3NEQ4, A0A8P0SRV3
      Related
      ENSCAFP00845016450.1, ENSCAFT00845020940.1
      Conserved Domains (4) summary
      TIGR01628
      Location:7 → 86
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      pfam09606
      Location:294 → 565
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      cd16876
      Location:636 → 728
      ARID_ARID1A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1A (ARID1A) and similar proteins
      pfam12031
      Location:1592 → 1847
      BAF250_C; SWI/SNF-like complex subunit BAF250/Osa

    4. XM_038659749.1 → XP_038515677.1  AT-rich interactive domain-containing protein 1A isoform X3

      UniProtKB/TrEMBL
      A0A8C0RXD1
      Related
      ENSCAFP00845016276.1, ENSCAFT00845020749.1
      Conserved Domains (5) summary
      TIGR01628
      Location:373 → 470
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      PRK07764
      Location:599 → 730
      PRK07764; DNA polymerase III subunits gamma and tau; Validated
      pfam09606
      Location:714 → 948
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      cd16876
      Location:1019 → 1111
      ARID_ARID1A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1A (ARID1A) and similar proteins
      pfam12031
      Location:1974 → 2229
      BAF250_C; SWI/SNF-like complex subunit BAF250/Osa

    5. XM_038659747.1 → XP_038515675.1  AT-rich interactive domain-containing protein 1A isoform X5

      UniProtKB/TrEMBL
      A0A8C0NAB2, A0A8C0RXD1, A0A8I3NLJ7
      Related
      ENSCAFP00845016201.1, ENSCAFT00845020655.1
      Conserved Domains (5) summary
      TIGR01628
      Location:373 → 470
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      PRK07764
      Location:599 → 730
      PRK07764; DNA polymerase III subunits gamma and tau; Validated
      pfam09606
      Location:714 → 948
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      cd16876
      Location:1019 → 1111
      ARID_ARID1A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1A (ARID1A) and similar proteins
      pfam12031
      Location:1975 → 2230
      BAF250_C; SWI/SNF-like complex subunit BAF250/Osa

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049262.1 Alternate UMICH_Zoey_3.1

      Range
      70719680..70789191 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038470602.1 → XP_038326530.1  AT-rich interactive domain-containing protein 1A isoform X2

      Conserved Domains (4) summary
      TIGR01628
      Location:373 → 470
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      pfam09606
      Location:678 → 949
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      cd16876
      Location:1020 → 1112
      ARID_ARID1A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1A (ARID1A) and similar proteins
      pfam12031
      Location:1975 → 2230
      BAF250_C; SWI/SNF-like complex subunit BAF250/Osa

    2. XM_038470600.1 → XP_038326528.1  AT-rich interactive domain-containing protein 1A isoform X1

      Conserved Domains (4) summary
      TIGR01628
      Location:373 → 470
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      pfam09606
      Location:678 → 949
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      cd16876
      Location:1020 → 1112
      ARID_ARID1A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1A (ARID1A) and similar proteins
      pfam12031
      Location:1976 → 2231
      BAF250_C; SWI/SNF-like complex subunit BAF250/Osa

    3. XM_038470604.1 → XP_038326532.1  AT-rich interactive domain-containing protein 1A isoform X4

      Conserved Domains (4) summary
      TIGR01628
      Location:7 → 86
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      pfam09606
      Location:294 → 565
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      cd16876
      Location:636 → 728
      ARID_ARID1A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1A (ARID1A) and similar proteins
      pfam12031
      Location:1592 → 1847
      BAF250_C; SWI/SNF-like complex subunit BAF250/Osa

    4. XM_038470603.1 → XP_038326531.1  AT-rich interactive domain-containing protein 1A isoform X3

      Conserved Domains (5) summary
      TIGR01628
      Location:373 → 470
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      PRK07764
      Location:599 → 730
      PRK07764; DNA polymerase III subunits gamma and tau; Validated
      pfam09606
      Location:714 → 948
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      cd16876
      Location:1019 → 1111
      ARID_ARID1A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1A (ARID1A) and similar proteins
      pfam12031
      Location:1974 → 2229
      BAF250_C; SWI/SNF-like complex subunit BAF250/Osa

    5. XM_038470601.1 → XP_038326529.1  AT-rich interactive domain-containing protein 1A isoform X5

      Conserved Domains (5) summary
      TIGR01628
      Location:373 → 470
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      PRK07764
      Location:599 → 730
      PRK07764; DNA polymerase III subunits gamma and tau; Validated
      pfam09606
      Location:714 → 948
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      cd16876
      Location:1019 → 1111
      ARID_ARID1A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1A (ARID1A) and similar proteins
      pfam12031
      Location:1975 → 2230
      BAF250_C; SWI/SNF-like complex subunit BAF250/Osa

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049743.1 Alternate UNSW_CanFamBas_1.0

      Range
      71725226..71794735 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038595667.1 → XP_038451595.1  LOW QUALITY PROTEIN: AT-rich interactive domain-containing protein 1A isoform X5

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049223.1 Alternate UU_Cfam_GSD_1.0

      Range
      72728646..72798165 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038531446.1 → XP_038387374.1  AT-rich interactive domain-containing protein 1A isoform X2

      UniProtKB/TrEMBL
      A0A8C0RXD1
      Conserved Domains (4) summary
      TIGR01628
      Location:373 → 470
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      pfam09606
      Location:678 → 949
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      cd16876
      Location:1020 → 1112
      ARID_ARID1A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1A (ARID1A) and similar proteins
      pfam12031
      Location:1975 → 2230
      BAF250_C; SWI/SNF-like complex subunit BAF250/Osa

    2. XM_038531443.1 → XP_038387371.1  AT-rich interactive domain-containing protein 1A isoform X1

      UniProtKB/TrEMBL
      A0A8C0RXD1
      Conserved Domains (4) summary
      TIGR01628
      Location:373 → 470
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      pfam09606
      Location:678 → 949
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      cd16876
      Location:1020 → 1112
      ARID_ARID1A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1A (ARID1A) and similar proteins
      pfam12031
      Location:1976 → 2231
      BAF250_C; SWI/SNF-like complex subunit BAF250/Osa

    3. XM_038531448.1 → XP_038387376.1  AT-rich interactive domain-containing protein 1A isoform X4

      UniProtKB/TrEMBL
      A0A8I3NEQ4, A0A8P0SRV3
      Conserved Domains (4) summary
      TIGR01628
      Location:7 → 86
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      pfam09606
      Location:294 → 565
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      cd16876
      Location:636 → 728
      ARID_ARID1A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1A (ARID1A) and similar proteins
      pfam12031
      Location:1592 → 1847
      BAF250_C; SWI/SNF-like complex subunit BAF250/Osa

    4. XM_038531447.1 → XP_038387375.1  AT-rich interactive domain-containing protein 1A isoform X3

      UniProtKB/TrEMBL
      A0A8C0RXD1
      Conserved Domains (5) summary
      TIGR01628
      Location:373 → 470
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      PRK07764
      Location:599 → 730
      PRK07764; DNA polymerase III subunits gamma and tau; Validated
      pfam09606
      Location:714 → 948
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      cd16876
      Location:1019 → 1111
      ARID_ARID1A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1A (ARID1A) and similar proteins
      pfam12031
      Location:1974 → 2229
      BAF250_C; SWI/SNF-like complex subunit BAF250/Osa

    5. XM_038531445.1 → XP_038387373.1  AT-rich interactive domain-containing protein 1A isoform X5

      UniProtKB/TrEMBL
      A0A8C0NAB2, A0A8C0RXD1, A0A8I3NLJ7
      Conserved Domains (5) summary
      TIGR01628
      Location:373 → 470
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      PRK07764
      Location:599 → 730
      PRK07764; DNA polymerase III subunits gamma and tau; Validated
      pfam09606
      Location:714 → 948
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      cd16876
      Location:1019 → 1111
      ARID_ARID1A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1A (ARID1A) and similar proteins
      pfam12031
      Location:1975 → 2230
      BAF250_C; SWI/SNF-like complex subunit BAF250/Osa

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006584.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      69909026..69978542 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005617743.4 → XP_005617800.2  AT-rich interactive domain-containing protein 1A isoform X2

      UniProtKB/TrEMBL
      A0A8C0RXD1
      Conserved Domains (4) summary
      TIGR01628
      Location:373 → 470
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      pfam09606
      Location:678 → 949
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      cd16876
      Location:1020 → 1112
      ARID_ARID1A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1A (ARID1A) and similar proteins
      pfam12031
      Location:1975 → 2230
      BAF250_C; SWI/SNF-like complex subunit BAF250/Osa

    2. XM_005617742.4 → XP_005617799.2  AT-rich interactive domain-containing protein 1A isoform X1

      UniProtKB/TrEMBL
      A0A8C0RXD1
      Conserved Domains (4) summary
      TIGR01628
      Location:373 → 470
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      pfam09606
      Location:678 → 949
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      cd16876
      Location:1020 → 1112
      ARID_ARID1A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1A (ARID1A) and similar proteins
      pfam12031
      Location:1976 → 2231
      BAF250_C; SWI/SNF-like complex subunit BAF250/Osa

    3. XM_005617745.4 → XP_005617802.2  AT-rich interactive domain-containing protein 1A isoform X4

      UniProtKB/TrEMBL
      A0A8I3NEQ4, A0A8P0SRV3
      Conserved Domains (4) summary
      TIGR01628
      Location:7 → 86
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      pfam09606
      Location:294 → 565
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      cd16876
      Location:636 → 728
      ARID_ARID1A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1A (ARID1A) and similar proteins
      pfam12031
      Location:1592 → 1847
      BAF250_C; SWI/SNF-like complex subunit BAF250/Osa

    4. XM_005617744.4 → XP_005617801.2  AT-rich interactive domain-containing protein 1A isoform X3

      UniProtKB/TrEMBL
      A0A8C0RXD1
      Conserved Domains (5) summary
      TIGR01628
      Location:373 → 470
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      PRK07764
      Location:599 → 730
      PRK07764; DNA polymerase III subunits gamma and tau; Validated
      pfam09606
      Location:714 → 948
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      cd16876
      Location:1019 → 1111
      ARID_ARID1A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1A (ARID1A) and similar proteins
      pfam12031
      Location:1974 → 2229
      BAF250_C; SWI/SNF-like complex subunit BAF250/Osa

    5. XM_847453.7 → XP_852546.4  AT-rich interactive domain-containing protein 1A isoform X5

      UniProtKB/TrEMBL
      A0A8C0NAB2, A0A8C0RXD1, A0A8I3NLJ7
      Conserved Domains (5) summary
      TIGR01628
      Location:373 → 470
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      PRK07764
      Location:599 → 730
      PRK07764; DNA polymerase III subunits gamma and tau; Validated
      pfam09606
      Location:714 → 948
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
      cd16876
      Location:1019 → 1111
      ARID_ARID1A; ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 1A (ARID1A) and similar proteins
      pfam12031
      Location:1975 → 2230
      BAF250_C; SWI/SNF-like complex subunit BAF250/Osa
    Nucleotide Protein
    Heading Accession and Version

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