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    TSKU tsukushi, small leucine rich proteoglycan [ Canis lupus familiaris (dog) ]

    Gene ID: 485178, updated on 5-Mar-2024

    Summary

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    Official Symbol
    TSKUprovided by VGNC
    Official Full Name
    tsukushi, small leucine rich proteoglycanprovided by VGNC
    Primary source
    VGNC:VGNC:52857
    See related
    Ensembl:ENSCAFG00845010425
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 21
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 21 NC_051825.1 (22116699..22130306, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 21 NC_006603.4 (21743504..21757126, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 21 NC_049242.1 (22030572..22044179, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 21 NC_049281.1 (21887862..21901417, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 21 NC_049762.1 (22107232..22120834, complement)

    Chromosome 21 - NC_051825.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119864973 Neighboring gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 6 Neighboring gene alkaline ceramidase 3 Neighboring gene T-complex protein 1 subunit eta-like Neighboring gene uncharacterized LOC106560172 Neighboring gene guanylate cyclase D-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tsukushin
    Names
    tsukushi small leucine rich proteoglycan homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051825.1 Reference ROS_Cfam_1.0

      Range
      22116699..22130306 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038430018.1 → XP_038285946.1  tsukushin isoform X1

      UniProtKB/TrEMBL
      A0A8C0P2D1, A0A8I3NG83
      Conserved Domains (2) summary
      COG4886
      Location:67 → 306
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:93 → 113
      LRR_RI; leucine-rich repeat [structural motif]

    2. XM_038430022.1 → XP_038285950.1  tsukushin isoform X1

      UniProtKB/TrEMBL
      A0A8C0P2D1, A0A8I3NG83
      Conserved Domains (2) summary
      COG4886
      Location:67 → 306
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:93 → 113
      LRR_RI; leucine-rich repeat [structural motif]

    3. XM_038430021.1 → XP_038285949.1  tsukushin isoform X1

      UniProtKB/TrEMBL
      A0A8C0P2D1, A0A8I3NG83
      Conserved Domains (2) summary
      COG4886
      Location:67 → 306
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:93 → 113
      LRR_RI; leucine-rich repeat [structural motif]

    4. XM_038430020.1 → XP_038285948.1  tsukushin isoform X1

      UniProtKB/TrEMBL
      A0A8C0P2D1, A0A8I3NG83
      Related
      ENSCAFP00845014457.1, ENSCAFT00845018532.1
      Conserved Domains (2) summary
      COG4886
      Location:67 → 306
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:93 → 113
      LRR_RI; leucine-rich repeat [structural motif]

    5. XM_038430019.1 → XP_038285947.1  tsukushin isoform X1

      UniProtKB/TrEMBL
      A0A8C0P2D1, A0A8I3NG83
      Conserved Domains (2) summary
      COG4886
      Location:67 → 306
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:93 → 113
      LRR_RI; leucine-rich repeat [structural motif]

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049281.1 Alternate UMICH_Zoey_3.1

      Range
      21887862..21901417 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038505399.1 → XP_038361327.1  tsukushin isoform X4

    2. XM_038505394.1 → XP_038361322.1  tsukushin isoform X2

    3. XM_038505396.1 → XP_038361324.1  tsukushin isoform X2

    4. XM_038505402.1 → XP_038361330.1  tsukushin isoform X4

    5. XM_038505401.1 → XP_038361329.1  tsukushin isoform X4

    6. XM_038505400.1 → XP_038361328.1  tsukushin isoform X4

    7. XM_038505398.1 → XP_038361326.1  tsukushin isoform X3

    8. XM_038505397.1 → XP_038361325.1  tsukushin isoform X2

    9. XM_038505395.1 → XP_038361323.1  tsukushin isoform X2

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049762.1 Alternate UNSW_CanFamBas_1.0

      Range
      22107232..22120834 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038632709.1 → XP_038488637.1  tsukushin isoform X1

      Conserved Domains (2) summary
      COG4886
      Location:67 → 306
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:93 → 113
      LRR_RI; leucine-rich repeat [structural motif]

    2. XM_038632713.1 → XP_038488641.1  tsukushin isoform X1

      Conserved Domains (2) summary
      COG4886
      Location:67 → 306
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:93 → 113
      LRR_RI; leucine-rich repeat [structural motif]

    3. XM_038632712.1 → XP_038488640.1  tsukushin isoform X1

      Conserved Domains (2) summary
      COG4886
      Location:67 → 306
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:93 → 113
      LRR_RI; leucine-rich repeat [structural motif]

    4. XM_038632711.1 → XP_038488639.1  tsukushin isoform X1

      Conserved Domains (2) summary
      COG4886
      Location:67 → 306
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:93 → 113
      LRR_RI; leucine-rich repeat [structural motif]

    5. XM_038632710.1 → XP_038488638.1  tsukushin isoform X1

      Conserved Domains (2) summary
      COG4886
      Location:67 → 306
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:93 → 113
      LRR_RI; leucine-rich repeat [structural motif]

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049242.1 Alternate UU_Cfam_GSD_1.0

      Range
      22030572..22044179 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038568548.1 → XP_038424476.1  tsukushin isoform X1

      UniProtKB/TrEMBL
      A0A8C0P2D1, A0A8C0QTH8
      Conserved Domains (2) summary
      COG4886
      Location:67 → 306
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:93 → 113
      LRR_RI; leucine-rich repeat [structural motif]

    2. XM_038568552.1 → XP_038424480.1  tsukushin isoform X1

      UniProtKB/TrEMBL
      A0A8C0P2D1, A0A8C0QTH8
      Conserved Domains (2) summary
      COG4886
      Location:67 → 306
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:93 → 113
      LRR_RI; leucine-rich repeat [structural motif]

    3. XM_038568551.1 → XP_038424479.1  tsukushin isoform X1

      UniProtKB/TrEMBL
      A0A8C0P2D1, A0A8C0QTH8
      Conserved Domains (2) summary
      COG4886
      Location:67 → 306
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:93 → 113
      LRR_RI; leucine-rich repeat [structural motif]

    4. XM_038568550.1 → XP_038424478.1  tsukushin isoform X1

      UniProtKB/TrEMBL
      A0A8C0P2D1, A0A8C0QTH8
      Conserved Domains (2) summary
      COG4886
      Location:67 → 306
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:93 → 113
      LRR_RI; leucine-rich repeat [structural motif]

    5. XM_038568549.1 → XP_038424477.1  tsukushin isoform X1

      UniProtKB/TrEMBL
      A0A8C0P2D1, A0A8C0QTH8
      Conserved Domains (2) summary
      COG4886
      Location:67 → 306
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:93 → 113
      LRR_RI; leucine-rich repeat [structural motif]

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006603.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      21743504..21757126 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038456322.1 → XP_038312250.1  tsukushin isoform X1

      UniProtKB/TrEMBL
      A0A8C0P2D1, A0A8P0SAS9
      Conserved Domains (2) summary
      COG4886
      Location:67 → 306
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:93 → 113
      LRR_RI; leucine-rich repeat [structural motif]

    2. XM_038456324.1 → XP_038312252.1  tsukushin isoform X1

      UniProtKB/TrEMBL
      A0A8C0P2D1, A0A8P0SAS9
      Conserved Domains (2) summary
      COG4886
      Location:67 → 306
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:93 → 113
      LRR_RI; leucine-rich repeat [structural motif]

    3. XM_005633465.4 → XP_005633522.4  tsukushin isoform X1

      UniProtKB/TrEMBL
      A0A8C0P2D1, A0A8P0SAS9
      Conserved Domains (2) summary
      COG4886
      Location:67 → 306
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:93 → 113
      LRR_RI; leucine-rich repeat [structural motif]

    4. XM_005633467.4 → XP_005633524.1  tsukushin isoform X1

      See identical proteins and their annotated locations for XP_005633524.1

      UniProtKB/TrEMBL
      A0A8C0P2D1, A0A8P0SAS9
      Conserved Domains (2) summary
      COG4886
      Location:67 → 306
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:93 → 113
      LRR_RI; leucine-rich repeat [structural motif]

    5. XM_038456323.1 → XP_038312251.1  tsukushin isoform X1

      UniProtKB/TrEMBL
      A0A8C0P2D1, A0A8P0SAS9
      Conserved Domains (2) summary
      COG4886
      Location:67 → 306
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      sd00033
      Location:93 → 113
      LRR_RI; leucine-rich repeat [structural motif]
    Nucleotide Protein
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