U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    PRDM13 PR/SET domain 13 [ Canis lupus familiaris (dog) ]

    Gene ID: 481934, updated on 5-Mar-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    PRDM13provided by VGNC
    Official Full Name
    PR/SET domain 13provided by VGNC
    Primary source
    VGNC:VGNC:54341
    See related
    Ensembl:ENSCAFG00845005747
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See PRDM13 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 12 NC_051816.1 (58627167..58634809)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 12 NC_006594.4 (57562568..57570210)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 12 NC_049233.1 (58076316..58083973)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 12 NC_049272.1 (57983496..57991136)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 12 NC_049753.1 (57830521..57838171)

    Chromosome 12 - NC_051816.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102153435 Neighboring gene thiosulfate sulfurtransferase like domain containing 3 Neighboring gene cyclin C Neighboring gene 60S ribosomal protein L23a-like Neighboring gene ribosomal protein 63, mitochondrial-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    LOW QUALITY PROTEIN: PR domain zinc finger protein 13; PR domain zinc finger protein 13
    Names
    PR domain containing 13

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051816.1 Reference ROS_Cfam_1.0

      Range
      58627167..58634809
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038684485.1 → XP_038540413.1  PR domain zinc finger protein 13

      UniProtKB/TrEMBL
      A0A8C0Q6A4, A0A8I3N1L9, A0A8P0TLJ8
      Related
      ENSCAFP00845007938.1, ENSCAFT00845010184.1
      Conserved Domains (5) summary
      COG5189
      Location:583 → 658
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:580 → 600
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00018
      Location:137 → 160
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd19197
      Location:18 → 119
      PR-SET_PRDM13; PR-SET domain found in PR domain zinc finger protein 13 (PRDM13) and similar proteins
      pfam00096
      Location:137 → 159
      zf-C2H2; Zinc finger, C2H2 type

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049272.1 Alternate UMICH_Zoey_3.1

      Range
      57983496..57991136
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038492802.1 → XP_038348730.1  PR domain zinc finger protein 13

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049753.1 Alternate UNSW_CanFamBas_1.0

      Range
      57830521..57838171
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038618922.1 → XP_038474850.1  LOW QUALITY PROTEIN: PR domain zinc finger protein 13

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049233.1 Alternate UU_Cfam_GSD_1.0

      Range
      58076316..58083973
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038555053.1 → XP_038410981.1  PR domain zinc finger protein 13

      UniProtKB/TrEMBL
      A0A8C0Q6A4

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006594.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      57562568..57570210
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038686185.1 → XP_038542113.1  PR domain zinc finger protein 13

      UniProtKB/TrEMBL
      A0A8C0Q6A4, A0A8I3N1L9, A0A8P0TLJ8
      Conserved Domains (5) summary
      COG5189
      Location:583 → 658
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:580 → 600
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00018
      Location:137 → 160
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd19197
      Location:18 → 119
      PR-SET_PRDM13; PR-SET domain found in PR domain zinc finger protein 13 (PRDM13) and similar proteins
      pfam00096
      Location:137 → 159
      zf-C2H2; Zinc finger, C2H2 type
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.