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    SUPT6H SPT6 homolog, histone chaperone and transcription elongation factor [ Canis lupus familiaris (dog) ]

    Gene ID: 480627, updated on 5-Mar-2024

    Summary

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    Official Symbol
    SUPT6Hprovided by VGNC
    Official Full Name
    SPT6 homolog, histone chaperone and transcription elongation factorprovided by VGNC
    Primary source
    VGNC:VGNC:49096
    See related
    Ensembl:ENSCAFG00845008432
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 9
    Exon count:
    37
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 9 NC_051813.1 (43677523..43714296)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 9 NC_006591.4 (42015365..42052125)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 9 NC_049230.1 (42830961..42867947)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 9 NC_049269.1 (42460966..42497722)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 9 NC_049750.1 (42753208..42789947)

    Chromosome 9 - NC_051813.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102154115 Neighboring gene KIAA0100 Neighboring gene stromal cell derived factor 2 Neighboring gene protein interacting with cyclin A1 Neighboring gene RAB34, member RAS oncogene family

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleosome binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nucleosome organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription elongation by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription elongation by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription elongation-coupled chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of transcription elongation factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription elongation factor SPT6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051813.1 Reference ROS_Cfam_1.0

      Range
      43677523..43714296
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038677479.1 → XP_038533407.1  transcription elongation factor SPT6

      UniProtKB/TrEMBL
      A0A8C0KHB4, A0A8C0N502, A0A8I3RW32, A0A8P0NJW8
      Conserved Domains (2) summary
      COG2183
      Location:372 → 1353
      Tex; Transcriptional accessory protein Tex/SPT6 [Transcription]
      pfam14633
      Location:1308 → 1512
      SH2_2; SH2 domain

    2. XM_038677478.1 → XP_038533406.1  transcription elongation factor SPT6

      UniProtKB/TrEMBL
      A0A8C0KHB4, A0A8C0N502, A0A8I3RW32, A0A8P0NJW8
      Related
      ENSCAFP00845011523.1, ENSCAFT00845014868.1
      Conserved Domains (2) summary
      COG2183
      Location:372 → 1353
      Tex; Transcriptional accessory protein Tex/SPT6 [Transcription]
      pfam14633
      Location:1308 → 1512
      SH2_2; SH2 domain

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049269.1 Alternate UMICH_Zoey_3.1

      Range
      42460966..42497722
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038486416.1 → XP_038342344.1  transcription elongation factor SPT6

      Conserved Domains (2) summary
      COG2183
      Location:372 → 1353
      Tex; Transcriptional accessory protein Tex/SPT6 [Transcription]
      pfam14633
      Location:1308 → 1512
      SH2_2; SH2 domain

    2. XM_038486415.1 → XP_038342343.1  transcription elongation factor SPT6

      Conserved Domains (2) summary
      COG2183
      Location:372 → 1353
      Tex; Transcriptional accessory protein Tex/SPT6 [Transcription]
      pfam14633
      Location:1308 → 1512
      SH2_2; SH2 domain

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049750.1 Alternate UNSW_CanFamBas_1.0

      Range
      42753208..42789947
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038612219.1 → XP_038468147.1  transcription elongation factor SPT6

      Conserved Domains (2) summary
      COG2183
      Location:372 → 1353
      Tex; Transcriptional accessory protein Tex/SPT6 [Transcription]
      pfam14633
      Location:1308 → 1512
      SH2_2; SH2 domain

    2. XM_038612218.1 → XP_038468146.1  transcription elongation factor SPT6

      Conserved Domains (2) summary
      COG2183
      Location:372 → 1353
      Tex; Transcriptional accessory protein Tex/SPT6 [Transcription]
      pfam14633
      Location:1308 → 1512
      SH2_2; SH2 domain

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049230.1 Alternate UU_Cfam_GSD_1.0

      Range
      42830961..42867947
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038548256.1 → XP_038404184.1  transcription elongation factor SPT6

      UniProtKB/TrEMBL
      A0A8C0KHB4, A0A8C0N502, A0A8I3RW32, A0A8P0NJW8
      Conserved Domains (2) summary
      COG2183
      Location:372 → 1353
      Tex; Transcriptional accessory protein Tex/SPT6 [Transcription]
      pfam14633
      Location:1308 → 1512
      SH2_2; SH2 domain

    2. XM_038548255.1 → XP_038404183.1  transcription elongation factor SPT6

      UniProtKB/TrEMBL
      A0A8C0KHB4, A0A8C0N502, A0A8I3RW32, A0A8P0NJW8
      Conserved Domains (2) summary
      COG2183
      Location:372 → 1353
      Tex; Transcriptional accessory protein Tex/SPT6 [Transcription]
      pfam14633
      Location:1308 → 1512
      SH2_2; SH2 domain

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006591.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      42015365..42052125
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014116784.3 → XP_013972259.1  transcription elongation factor SPT6

      UniProtKB/TrEMBL
      A0A8C0KHB4, A0A8C0N502, A0A8I3RW32, A0A8P0NJW8
      Conserved Domains (2) summary
      COG2183
      Location:372 → 1353
      Tex; Transcriptional accessory protein Tex/SPT6 [Transcription]
      pfam14633
      Location:1308 → 1512
      SH2_2; SH2 domain

    2. XM_537747.6 → XP_537747.2  transcription elongation factor SPT6

      UniProtKB/TrEMBL
      A0A8C0KHB4, A0A8C0N502, A0A8I3RW32, A0A8P0NJW8
      Conserved Domains (2) summary
      COG2183
      Location:372 → 1353
      Tex; Transcriptional accessory protein Tex/SPT6 [Transcription]
      pfam14633
      Location:1308 → 1512
      SH2_2; SH2 domain
    Nucleotide Protein
    Heading Accession and Version

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