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    LOC479047 tubulin tyrosine ligase-like family, member 13 [ Canis lupus familiaris (dog) ]

    Gene ID: 479047, updated on 22-Jan-2024

    Summary

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    Gene symbol
    LOC479047
    Gene description
    tubulin tyrosine ligase-like family, member 13
    See related
    Ensembl:ENSCAFG00845001321
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Also known as
    TTLL13
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 3 NC_051807.1 (53613392..53625072)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 3 NC_006585.4 (55835154..55846836)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 3 NC_049224.1 (53685091..53696772)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 3 NC_049263.1 (53133476..53145156)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 3 NC_049744.1 (53344608..53356283)

    Chromosome 3 - NC_051807.1Genomic Context describing neighboring genes Neighboring gene semaphorin 4B Neighboring gene calcium and integrin binding 1 Neighboring gene GDP-D-glucose phosphorylase 1 Neighboring gene neugrin, neurite outgrowth associated Neighboring gene uncharacterized LOC111095228 Neighboring gene VPS33B late endosome and lysosome associated

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables tubulin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables tubulin-glutamic acid ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in microtubule cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein polyglutamylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cilium IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: tubulin polyglutamylase TTLL13P

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051807.1 Reference ROS_Cfam_1.0

      Range
      53613392..53625072
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038661353.1 → XP_038517281.1  LOW QUALITY PROTEIN: tubulin polyglutamylase TTLL13P

      UniProtKB/TrEMBL
      A0A8C0RAY1, A0A8I3MP62
      Related
      ENSCAFP00845001836.1, ENSCAFT00845002316.1
      Conserved Domains (1) summary
      pfam03133
      Location:129 → 423
      TTL; Tubulin-tyrosine ligase family

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049263.1 Alternate UMICH_Zoey_3.1

      Range
      53133476..53145156
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038471918.1 → XP_038327846.1  LOW QUALITY PROTEIN: tubulin polyglutamylase TTLL13P

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049744.1 Alternate UNSW_CanFamBas_1.0

      Range
      53344608..53356283
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038597171.1 → XP_038453099.1  LOW QUALITY PROTEIN: tubulin polyglutamylase TTLL13P

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049224.1 Alternate UU_Cfam_GSD_1.0

      Range
      53685091..53696772
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038532848.1 → XP_038388776.1  LOW QUALITY PROTEIN: tubulin polyglutamylase TTLL13P

      UniProtKB/TrEMBL
      A0A8C0RVZ6, A0A8P0NE15

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006585.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      55835154..55846836
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022416939.2 → XP_022272647.1  LOW QUALITY PROTEIN: tubulin polyglutamylase TTLL13P

      UniProtKB/TrEMBL
      A0A8C0RVZ6, A0A8P0NE15
      Conserved Domains (2) summary
      pfam03133
      Location:129 → 409
      TTL; Tubulin-tyrosine ligase family
      cl25742
      Location:422 → 532
      ERM; Ezrin/radixin/moesin family
    Nucleotide Protein
    Heading Accession and Version

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