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    RNF5 ring finger protein 5 [ Canis lupus familiaris (dog) ]

    Gene ID: 474858, updated on 5-Mar-2024

    Summary

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    Official Symbol
    RNF5provided by VGNC
    Official Full Name
    ring finger protein 5provided by VGNC
    Primary source
    VGNC:VGNC:45673
    See related
    Ensembl:ENSCAFG00845014858
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See RNF5 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 12 NC_051816.1 (1709473..1735603)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 12 NC_006594.4 (1704972..1712334)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 12 NC_049233.1 (1704446..1711809)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 12 NC_049272.1 (1572512..1579807)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 12 NC_049753.1 (1638128..1645487)

    Chromosome 12 - NC_051816.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119874142 Neighboring gene palmitoyl-protein thioesterase 2 Neighboring gene 1-acylglycerol-3-phosphate O-acyltransferase 1 Neighboring gene EGF like domain multiple 8 Neighboring gene butyrophilin-like protein 1 Neighboring gene advanced glycosylation end-product specific receptor Neighboring gene notch receptor 4 Neighboring gene PBX homeobox 2 Neighboring gene G protein signaling modulator 3 Neighboring gene glutamic acid-rich protein-like Neighboring gene thymosin beta 4, X-linked pseudogene Neighboring gene U6 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin-like protein conjugating enzyme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase RNF5
    XP_005627232.1
    XP_022281577.1
    XP_038347346.1
    XP_038347347.1
    XP_038347348.1
    XP_038409563.1
    XP_038409564.1
    XP_038409565.1
    XP_038473440.1
    XP_038473441.1
    XP_038473442.1
    XP_038539027.1
    XP_038539028.1
    XP_038539029.1
    XP_038539030.1
    XP_532092.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051816.1 Reference ROS_Cfam_1.0

      Range
      1709473..1735603
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038683099.1 → XP_038539027.1  E3 ubiquitin-protein ligase RNF5 isoform X3

      Conserved Domains (2) summary
      PLN03208
      Location:21 → 116
      PLN03208; E3 ubiquitin-protein ligase RMA2; Provisional
      cd16743
      Location:25 → 70
      RING-HC_RNF5; RING finger, HC subclass, found in RING finger protein 5 (RNF5) and similar proteins

    2. XM_038683100.1 → XP_038539028.1  E3 ubiquitin-protein ligase RNF5 isoform X4

      Conserved Domains (2) summary
      PLN03208
      Location:21 → 116
      PLN03208; E3 ubiquitin-protein ligase RMA2; Provisional
      cd16743
      Location:25 → 70
      RING-HC_RNF5; RING finger, HC subclass, found in RING finger protein 5 (RNF5) and similar proteins

    3. XM_038683102.1 → XP_038539030.1  E3 ubiquitin-protein ligase RNF5 isoform X2

      Conserved Domains (2) summary
      PLN03208
      Location:21 → 116
      PLN03208; E3 ubiquitin-protein ligase RMA2; Provisional
      cd16743
      Location:25 → 70
      RING-HC_RNF5; RING finger, HC subclass, found in RING finger protein 5 (RNF5) and similar proteins

    4. XM_038683101.1 → XP_038539029.1  E3 ubiquitin-protein ligase RNF5 isoform X1

      UniProtKB/TrEMBL
      A0A8C0JI91, A0A8C0Z0W2, A0A8I3NV30
      Related
      ENSCAFP00845020949.1, ENSCAFT00845026578.1
      Conserved Domains (2) summary
      PLN03208
      Location:21 → 116
      PLN03208; E3 ubiquitin-protein ligase RMA2; Provisional
      cd16743
      Location:25 → 70
      RING-HC_RNF5; RING finger, HC subclass, found in RING finger protein 5 (RNF5) and similar proteins

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049272.1 Alternate UMICH_Zoey_3.1

      Range
      1572512..1579807
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038491419.1 → XP_038347347.1  E3 ubiquitin-protein ligase RNF5 isoform X2

      Conserved Domains (2) summary
      PLN03208
      Location:21 → 116
      PLN03208; E3 ubiquitin-protein ligase RMA2; Provisional
      cd16743
      Location:25 → 70
      RING-HC_RNF5; RING finger, HC subclass, found in RING finger protein 5 (RNF5) and similar proteins

    2. XM_038491418.1 → XP_038347346.1  E3 ubiquitin-protein ligase RNF5 isoform X1

      Conserved Domains (2) summary
      PLN03208
      Location:21 → 116
      PLN03208; E3 ubiquitin-protein ligase RMA2; Provisional
      cd16743
      Location:25 → 70
      RING-HC_RNF5; RING finger, HC subclass, found in RING finger protein 5 (RNF5) and similar proteins

    3. XM_038491420.1 → XP_038347348.1  E3 ubiquitin-protein ligase RNF5 isoform X5

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049753.1 Alternate UNSW_CanFamBas_1.0

      Range
      1638128..1645487
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038617513.1 → XP_038473441.1  E3 ubiquitin-protein ligase RNF5 isoform X2

      Conserved Domains (2) summary
      PLN03208
      Location:21 → 116
      PLN03208; E3 ubiquitin-protein ligase RMA2; Provisional
      cd16743
      Location:25 → 70
      RING-HC_RNF5; RING finger, HC subclass, found in RING finger protein 5 (RNF5) and similar proteins

    2. XM_038617512.1 → XP_038473440.1  E3 ubiquitin-protein ligase RNF5 isoform X1

      Conserved Domains (2) summary
      PLN03208
      Location:21 → 116
      PLN03208; E3 ubiquitin-protein ligase RMA2; Provisional
      cd16743
      Location:25 → 70
      RING-HC_RNF5; RING finger, HC subclass, found in RING finger protein 5 (RNF5) and similar proteins

    3. XM_038617514.1 → XP_038473442.1  E3 ubiquitin-protein ligase RNF5 isoform X6

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049233.1 Alternate UU_Cfam_GSD_1.0

      Range
      1704446..1711809
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038553636.1 → XP_038409564.1  E3 ubiquitin-protein ligase RNF5 isoform X2

      Conserved Domains (2) summary
      PLN03208
      Location:21 → 116
      PLN03208; E3 ubiquitin-protein ligase RMA2; Provisional
      cd16743
      Location:25 → 70
      RING-HC_RNF5; RING finger, HC subclass, found in RING finger protein 5 (RNF5) and similar proteins

    2. XM_038553635.1 → XP_038409563.1  E3 ubiquitin-protein ligase RNF5 isoform X1

      UniProtKB/TrEMBL
      A0A8C0JI91, A0A8C0Z0W2, A0A8I3NV30
      Conserved Domains (2) summary
      PLN03208
      Location:21 → 116
      PLN03208; E3 ubiquitin-protein ligase RMA2; Provisional
      cd16743
      Location:25 → 70
      RING-HC_RNF5; RING finger, HC subclass, found in RING finger protein 5 (RNF5) and similar proteins

    3. XM_038553637.1 → XP_038409565.1  E3 ubiquitin-protein ligase RNF5 isoform X7

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006594.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      1704972..1712334
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022425869.2 → XP_022281577.1  E3 ubiquitin-protein ligase RNF5 isoform X2

      Conserved Domains (2) summary
      PLN03208
      Location:21 → 116
      PLN03208; E3 ubiquitin-protein ligase RMA2; Provisional
      cd16743
      Location:25 → 70
      RING-HC_RNF5; RING finger, HC subclass, found in RING finger protein 5 (RNF5) and similar proteins

    2. XM_532092.7 → XP_532092.1  E3 ubiquitin-protein ligase RNF5 isoform X1

      UniProtKB/TrEMBL
      A0A8C0JI91, A0A8C0Z0W2, A0A8I3NV30
      Conserved Domains (2) summary
      PLN03208
      Location:21 → 116
      PLN03208; E3 ubiquitin-protein ligase RMA2; Provisional
      cd16743
      Location:25 → 70
      RING-HC_RNF5; RING finger, HC subclass, found in RING finger protein 5 (RNF5) and similar proteins

    3. XM_005627175.4 → XP_005627232.1  E3 ubiquitin-protein ligase RNF5 isoform X8

      Conserved Domains (2) summary
      cl17238
      Location:9 → 35
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
      cl28410
      Location:25 → 81
      RAD18; RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
    Nucleotide Protein
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