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    KDM3A lysine demethylase 3A [ Gallus gallus (chicken) ]

    Gene ID: 422917, updated on 3-Apr-2024

    Summary

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    Symbol
    KDM3Aprovided by CGNC
    Full Name
    lysine demethylase 3Aprovided by CGNC
    Primary source
    CGNC:11788
    See related
    Ensembl:ENSGALG00010016966
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    JHDM2A; JMJD1A
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    27
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (85084875..85113033)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (85062629..85090773)

    Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein L35 Neighboring gene microRNA mir-12275 Neighboring gene receptor accessory protein 1 Neighboring gene uncharacterized LOC121110784 Neighboring gene charged multivesicular body protein 3 Neighboring gene ring finger protein 103

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone H3K9 demethylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coregulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of histone deacetylase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lysine-specific demethylase 3A
    Names
    [histone H3]-dimethyl-L-lysine(9) demethylase 3A
    jmjC domain-containing histone demethylation protein 2A
    jumonji domain containing 1A
    jumonji domain-containing protein 1A
    lysine (K)-specific demethylase 3A
    NP_001012909.2
    XP_015141395.2
    XP_040555001.1
    XP_046772381.1
    XP_046772382.1
    XP_046772383.1
    XP_046772384.1
    XP_046796220.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001012891.2 → NP_001012909.2  lysine-specific demethylase 3A

      Status: PROVISIONAL

      Source sequence(s)
      JAENSK010000074
      UniProtKB/Swiss-Prot
      Q5ZIX8
      UniProtKB/TrEMBL
      A0A8V0YZ53
      Related
      ENSGALP00010023930.1, ENSGALT00010040966.1
      Conserved Domains (2) summary
      smart00558
      Location:1084 → 1138
      JmjC; A domain family that is part of the cupin metalloenzyme superfamily
      cl00295
      Location:669 → 706
      ZZ; Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have ...

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      85084875..85113033
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040699067.2 → XP_040555001.1  lysine-specific demethylase 3A isoform X1

      UniProtKB/Swiss-Prot
      Q5ZIX8
      UniProtKB/TrEMBL
      A0A8V0YZ53
      Conserved Domains (2) summary
      smart00558
      Location:1084 → 1138
      JmjC; A domain family that is part of the cupin metalloenzyme superfamily
      cl00295
      Location:669 → 706
      ZZ; Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have ...

    2. XM_046940264.1 → XP_046796220.1  lysine-specific demethylase 3A isoform X1

      UniProtKB/TrEMBL
      A0A8V0YZ53

    3. XM_015285909.4 → XP_015141395.2  lysine-specific demethylase 3A isoform X1

      UniProtKB/Swiss-Prot
      Q5ZIX8
      UniProtKB/TrEMBL
      A0A8V0YZ53
      Conserved Domains (2) summary
      smart00558
      Location:1084 → 1138
      JmjC; A domain family that is part of the cupin metalloenzyme superfamily
      cl00295
      Location:669 → 706
      ZZ; Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have ...

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      85062629..85090773
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046916427.1 → XP_046772383.1  lysine-specific demethylase 3A isoform X1

    2. XM_046916426.1 → XP_046772382.1  lysine-specific demethylase 3A isoform X1

    3. XM_046916428.1 → XP_046772384.1  lysine-specific demethylase 3A isoform X1

    4. XM_046916425.1 → XP_046772381.1  lysine-specific demethylase 3A isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5ZIX8.1 GenPept UniProtKB/Swiss-Prot:Q5ZIX8

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