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    LAMP2 lysosomal associated membrane protein 2 [ Gallus gallus (chicken) ]

    Gene ID: 414800, updated on 3-Apr-2024

    Summary

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    Symbol
    LAMP2provided by CGNC
    Full Name
    lysosomal associated membrane protein 2provided by CGNC
    Primary source
    CGNC:6505
    See related
    Ensembl:ENSGALG00010012431
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 4 NC_052535.1 (16379518..16396266)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 4 NC_052576.1 (16417673..16434419)

    Chromosome 4 - NC_052535.1Genomic Context describing neighboring genes Neighboring gene MCTS1, re-initiation and release factor Neighboring gene cullin 4B Neighboring gene ATPase Na+/K+ transporting family member beta 4 Neighboring gene transmembrane protein 255A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The family of LAMP-2 proteins arises by alternative splicing from a single gene: characterization of the avian LAMP-2 gene and identification of mammalian homologs of LAMP-2b and LAMP-2c. Gough NR, et al. DNA Cell Biol, 1995 Oct. PMID 7546292
    2. Expressed sequence tag analysis of Eimeria-stimulated intestinal intraepithelial lymphocytes in chickens. Min W, et al. Mol Biotechnol, 2005 Jun. PMID 15920284
    3. Chicken genomics resource: sequencing and annotation of 35,407 ESTs from single and multiple tissue cDNA libraries and CAP3 assembly of a chicken gene index. Carre W, et al. Physiol Genomics, 2006 May 16. PMID 16554550
    4. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    lysosome-associated membrane glycoprotein 2
    Names
    LAMP-2
    lysosome-associated membrane glycoprotein LAMP-2
    lysosome-associated membrane protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001001749.1 → NP_001001749.1  lysosome-associated membrane glycoprotein 2 precursor

      See identical proteins and their annotated locations for NP_001001749.1

      Status: PROVISIONAL

      Source sequence(s)
      U10547
      UniProtKB/Swiss-Prot
      Q90616, Q90617, Q90618
      UniProtKB/TrEMBL
      A0A8V0YMM0
      Related
      ENSGALP00010017372.1, ENSGALT00010029832.1
      Conserved Domains (1) summary
      pfam01299
      Location:109 → 425
      Lamp; Lysosome-associated membrane glycoprotein (Lamp)

    2. NM_001397756.1 → NP_001384685.1  lysosome-associated membrane glycoprotein 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) has the shortest eighth intron.
      Source sequence(s)
      AJ453887, BM425836, U10546, U10547, U10548
      Related
      ENSGALP00010017360.1, ENSGALT00010029815.1

    3. NM_001397757.1 → NP_001384686.1  lysosome-associated membrane glycoprotein 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) has the intermediate length eighth intron.
      Source sequence(s)
      AJ453448, CD731228, U10546, U10547
      UniProtKB/TrEMBL
      A0A8V0YEM2
      Related
      ENSGALP00010017368.1, ENSGALT00010029825.1

    4. NM_001397758.1 → NP_001384687.1  lysosome-associated membrane glycoprotein 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) has the longest length eighth intron.
      Source sequence(s)
      AJ453448, BU378437, DN850765, U10546, U10547
      UniProtKB/TrEMBL
      A0A8V0YHV5

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052535.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      16379518..16396266
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052576.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      16417673..16434419
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q90617.1 GenPept UniProtKB/Swiss-Prot:Q90617

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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