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    CLIP1 CAP-Gly domain containing linker protein 1 [ Gallus gallus (chicken) ]

    Gene ID: 395784, updated on 3-Apr-2024

    Summary

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    Symbol
    CLIP1provided by CGNC
    Full Name
    CAP-Gly domain containing linker protein 1provided by CGNC
    Primary source
    CGNC:3295
    See related
    Ensembl:ENSGALG00010027040
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Also known as
    RSN
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 15
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 15 NC_052546.1 (5831085..5893016, complement)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 15 NC_052587.1 (5841686..5903654, complement)

    Chromosome 15 - NC_052546.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121106891 Neighboring gene diablo IAP-binding mitochondrial protein Neighboring gene VPS33A core subunit of CORVET and HOPS Neighboring gene atherin-like Neighboring gene zinc finger CCHC-type containing 8 Neighboring gene arginine and serine rich coiled-coil 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cloning and expression of chicken CLIP-170 and restin isoforms. Griparic L, et al. Gene, 1998 Jan 12. PMID 9469933
    2. Identification and expression of two novel CLIP-170/Restin isoforms expressed predominantly in muscle. Griparic L, et al. Biochim Biophys Acta, 1998 Oct 21. PMID 9784600
    3. A comprehensive collection of chicken cDNAs. Boardman PE, et al. Curr Biol, 2002 Nov 19. PMID 12445392
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables microtubule plus-end binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytoplasmic microtubule organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of microtubule polymerization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in microtubule plus-end IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CAP-Gly domain-containing linker protein 1
    Names
    CLIP-170
    cytoplasmic linker protein 170
    cytoplasmic linker protein CLIP-170
    restin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001396663.1 → NP_001383592.1  CAP-Gly domain-containing linker protein 1 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) has 28 exons. The eleventh intron is the short one.
      Source sequence(s)
      AF014012, AF045650, BQ484995, BU226675, BU234690, BU248759, BU395439, BU442356, BX950846, CV039124, HAEK01007766, JAENSK010000260
      UniProtKB/TrEMBL
      A0A8V1A6W4
      Conserved Domains (3) summary
      PTZ00121
      Location:345 → 1044
      PTZ00121; MAEBL; Provisional
      smart01052
      Location:217 → 282
      CAP_GLY; Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network
      TIGR02168
      Location:705 → 1529
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    2. NM_001396664.1 → NP_001383593.1  CAP-Gly domain-containing linker protein 1 isoform 2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) has 25 exons. It is lacking the ninth exon, the eighteenth exon and the twenty-third exon. The eleventh intron is the longer variant.
      Source sequence(s)
      AF014012, AF045650, BU226675, BU234690, BU248759, CV039124, JAENSK010000260
      UniProtKB/Swiss-Prot
      O42184, O42228, O57563, O57564
      UniProtKB/TrEMBL
      A0A8V1ACB1
      Related
      ENSGALP00010039860.1, ENSGALT00010065565.1
      Conserved Domains (4) summary
      TIGR02168
      Location:668 → 1343
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam15921
      Location:345 → 941
      CCDC158; Coiled-coil domain-containing protein 158
      pfam01302
      Location:217 → 281
      CAP_GLY; CAP-Gly domain
      pfam16641
      Location:1411 → 1427
      CLIP1_ZNF; CLIP1 zinc knuckle

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052546.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      5831085..5893016 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040648416.2 → XP_040504350.1  CAP-Gly domain-containing linker protein 1 isoform X13

      UniProtKB/TrEMBL
      A0A8V1A6W4
      Conserved Domains (3) summary
      smart01052
      Location:217 → 282
      CAP_GLY; Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network
      COG1196
      Location:335 → 695
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:649 → 1473
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    2. XM_040648413.2 → XP_040504347.1  CAP-Gly domain-containing linker protein 1 isoform X10

      UniProtKB/TrEMBL
      A0A8V1A6W4
      Conserved Domains (3) summary
      smart01052
      Location:217 → 282
      CAP_GLY; Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network
      TIGR02168
      Location:660 → 1484
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam15921
      Location:348 → 961
      CCDC158; Coiled-coil domain-containing protein 158

    3. XM_040648411.2 → XP_040504345.1  CAP-Gly domain-containing linker protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A8V1A6W4
      Conserved Domains (3) summary
      PTZ00121
      Location:335 → 1034
      PTZ00121; MAEBL; Provisional
      smart01052
      Location:217 → 282
      CAP_GLY; Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network
      TIGR02168
      Location:695 → 1519
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    4. XM_040648418.2 → XP_040504352.1  CAP-Gly domain-containing linker protein 1 isoform X18

      UniProtKB/TrEMBL
      A0A8V1A6W4
      Conserved Domains (2) summary
      smart01052
      Location:217 → 282
      CAP_GLY; Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network
      COG1196
      Location:689 → 1591
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    5. XM_046901097.1 → XP_046757053.1  CAP-Gly domain-containing linker protein 1 isoform X14

    6. XM_015275203.4 → XP_015130689.1  CAP-Gly domain-containing linker protein 1 isoform X27

      UniProtKB/TrEMBL
      A0A8V1A1V2
      Related
      ENSGALP00010039857.1, ENSGALT00010065559.1
      Conserved Domains (5) summary
      COG5244
      Location:215 → 546
      NIP100; Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:659 → 1314
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam01302
      Location:217 → 281
      CAP_GLY; CAP-Gly domain
      pfam05667
      Location:519 → 675
      DUF812; Protein of unknown function (DUF812)
      pfam16641
      Location:1382 → 1398
      CLIP1_ZNF; CLIP1 zinc knuckle

    7. XM_040648415.2 → XP_040504349.1  CAP-Gly domain-containing linker protein 1 isoform X12

      UniProtKB/TrEMBL
      A0A8V1A6W4
      Related
      ENSGALP00010039859.1, ENSGALT00010065564.1
      Conserved Domains (3) summary
      smart01052
      Location:217 → 282
      CAP_GLY; Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network
      COG1196
      Location:345 → 705
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:659 → 1483
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    8. XM_015275190.4 → XP_015130676.2  CAP-Gly domain-containing linker protein 1 isoform X11

      UniProtKB/TrEMBL
      A0A8V1A6W4
      Conserved Domains (3) summary
      smart01052
      Location:217 → 282
      CAP_GLY; Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network
      COG1196
      Location:345 → 705
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:659 → 1483
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    9. XM_025155424.3 → XP_025011192.1  CAP-Gly domain-containing linker protein 1 isoform X29

      UniProtKB/TrEMBL
      A0A8V1AED1
      Related
      ENSGALP00010039863.1, ENSGALT00010065568.1
      Conserved Domains (3) summary
      COG1196
      Location:355 → 1186
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam01302
      Location:217 → 281
      CAP_GLY; CAP-Gly domain
      pfam16641
      Location:1309 → 1325
      CLIP1_ZNF; CLIP1 zinc knuckle

    10. XM_025155423.3 → XP_025011191.2  CAP-Gly domain-containing linker protein 1 isoform X19

      UniProtKB/TrEMBL
      A0A8V1A6W4
      Conserved Domains (4) summary
      PTZ00121
      Location:345 → 1078
      PTZ00121; MAEBL; Provisional
      smart01052
      Location:217 → 282
      CAP_GLY; Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network
      COG1196
      Location:719 → 1587
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02169
      Location:1234 → 2001
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

    11. XM_015275201.4 → XP_015130687.1  CAP-Gly domain-containing linker protein 1 isoform X25

      UniProtKB/TrEMBL
      A0A8V1A1V2
      Related
      ENSGALP00010039862.1, ENSGALT00010065567.1
      Conserved Domains (3) summary
      COG1196
      Location:355 → 1159
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam01302
      Location:217 → 281
      CAP_GLY; CAP-Gly domain
      pfam16641
      Location:1417 → 1433
      CLIP1_ZNF; CLIP1 zinc knuckle

    12. XM_015275187.4 → XP_015130673.2  CAP-Gly domain-containing linker protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A8V1A6W4
      Conserved Domains (3) summary
      PTZ00121
      Location:345 → 1033
      PTZ00121; MAEBL; Provisional
      smart01052
      Location:217 → 282
      CAP_GLY; Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network
      TIGR02168
      Location:694 → 1518
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    13. XM_040648417.2 → XP_040504351.1  CAP-Gly domain-containing linker protein 1 isoform X16

      UniProtKB/TrEMBL
      A0A8V1A6W4
      Conserved Domains (3) summary
      smart01052
      Location:217 → 282
      CAP_GLY; Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network
      COG1196
      Location:700 → 1602
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:354 → 973
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    14. XM_015275202.4 → XP_015130688.1  CAP-Gly domain-containing linker protein 1 isoform X26

      UniProtKB/TrEMBL
      A0A8V1A1V2
      Conserved Domains (4) summary
      COG1196
      Location:475 → 1277
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam17380
      Location:360 → 505
      DUF5401; Family of unknown function (DUF5401)
      pfam01302
      Location:217 → 281
      CAP_GLY; CAP-Gly domain
      pfam16641
      Location:1400 → 1416
      CLIP1_ZNF; CLIP1 zinc knuckle

    15. XM_015275193.4 → XP_015130679.2  CAP-Gly domain-containing linker protein 1 isoform X20

      UniProtKB/TrEMBL
      A0A8V1A6W4
      Conserved Domains (3) summary
      smart01052
      Location:217 → 282
      CAP_GLY; Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network
      COG1196
      Location:698 → 1570
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam15921
      Location:358 → 996
      CCDC158; Coiled-coil domain-containing protein 158

    16. XM_015275192.4 → XP_015130678.2  CAP-Gly domain-containing linker protein 1 isoform X17

      UniProtKB/TrEMBL
      A0A8V1A6W4
      Conserved Domains (3) summary
      PTZ00121
      Location:345 → 1089
      PTZ00121; MAEBL; Provisional
      smart01052
      Location:217 → 282
      CAP_GLY; Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network
      COG1196
      Location:730 → 1598
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    17. XM_040648423.2 → XP_040504357.1  CAP-Gly domain-containing linker protein 1 isoform X28

      UniProtKB/TrEMBL
      A0A8V1AED1
      Conserved Domains (2) summary
      smart01052
      Location:217 → 282
      CAP_GLY; Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network
      COG1196
      Location:353 → 1094
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    18. XM_015275191.4 → XP_015130677.2  CAP-Gly domain-containing linker protein 1 isoform X15

      UniProtKB/TrEMBL
      A0A8V1A6W4
      Conserved Domains (3) summary
      smart01052
      Location:217 → 282
      CAP_GLY; Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network
      COG1196
      Location:735 → 1637
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:354 → 1045
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    19. XM_046901096.1 → XP_046757052.1  CAP-Gly domain-containing linker protein 1 isoform X6

    20. XM_015275189.4 → XP_015130675.2  CAP-Gly domain-containing linker protein 1 isoform X8

      UniProtKB/TrEMBL
      A0A8V1A6W4
      Related
      ENSGALP00010039851.1, ENSGALT00010065549.1
      Conserved Domains (3) summary
      smart01052
      Location:217 → 282
      CAP_GLY; Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network
      COG1196
      Location:813 → 1679
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:408 → 1195
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    21. XM_015275185.4 → XP_015130671.2  CAP-Gly domain-containing linker protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8V1A6W4
      Conserved Domains (3) summary
      smart01052
      Location:217 → 282
      CAP_GLY; Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network
      PRK03918
      Location:406 → 930
      PRK03918; DNA double-strand break repair ATPase Rad50
      TIGR02168
      Location:679 → 1523
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    22. XM_015275188.4 → XP_015130674.2  CAP-Gly domain-containing linker protein 1 isoform X7

      UniProtKB/TrEMBL
      A0A8V1A6W4
      Conserved Domains (3) summary
      smart01052
      Location:217 → 282
      CAP_GLY; Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network
      COG1196
      Location:819 → 1685
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:358 → 1056
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    23. XM_015275200.4 → XP_015130686.1  CAP-Gly domain-containing linker protein 1 isoform X24

      UniProtKB/TrEMBL
      A0A8V1A1V2
      Conserved Domains (4) summary
      PTZ00121
      Location:345 → 1044
      PTZ00121; MAEBL; Provisional
      TIGR02168
      Location:705 → 1360
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam01302
      Location:217 → 281
      CAP_GLY; CAP-Gly domain
      pfam16641
      Location:1428 → 1444
      CLIP1_ZNF; CLIP1 zinc knuckle

    24. XM_015275199.4 → XP_015130685.1  CAP-Gly domain-containing linker protein 1 isoform X23

      UniProtKB/TrEMBL
      A0A8V1A1V2
      Conserved Domains (4) summary
      COG1196
      Location:510 → 1312
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:354 → 633
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam01302
      Location:217 → 281
      CAP_GLY; CAP-Gly domain
      pfam16641
      Location:1435 → 1451
      CLIP1_ZNF; CLIP1 zinc knuckle

    25. XM_015275186.4 → XP_015130672.2  CAP-Gly domain-containing linker protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8V1A6W4
      Related
      ENSGALP00010039853.1, ENSGALT00010065552.1
      Conserved Domains (3) summary
      PTZ00121
      Location:345 → 1044
      PTZ00121; MAEBL; Provisional
      smart01052
      Location:217 → 282
      CAP_GLY; Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network
      TIGR02168
      Location:705 → 1529
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    26. XM_040648414.2 → XP_040504348.1  CAP-Gly domain-containing linker protein 1 isoform X11

      UniProtKB/TrEMBL
      A0A8V1A6W4
      Conserved Domains (3) summary
      smart01052
      Location:217 → 282
      CAP_GLY; Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network
      COG1196
      Location:345 → 705
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:659 → 1483
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    27. XM_040648412.2 → XP_040504346.1  CAP-Gly domain-containing linker protein 1 isoform X9

      UniProtKB/TrEMBL
      A0A8V1A6W4
      Conserved Domains (3) summary
      smart01052
      Location:217 → 282
      CAP_GLY; Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network
      TIGR02168
      Location:670 → 1494
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam15921
      Location:358 → 971
      CCDC158; Coiled-coil domain-containing protein 158

    28. XM_015275183.4 → XP_015130669.2  CAP-Gly domain-containing linker protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V1A6W4
      Conserved Domains (3) summary
      PTZ00121
      Location:345 → 1044
      PTZ00121; MAEBL; Provisional
      smart01052
      Location:217 → 282
      CAP_GLY; Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network
      TIGR02168
      Location:705 → 1529
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    29. XM_015275196.4 → XP_015130682.2  CAP-Gly domain-containing linker protein 1 isoform X21

      UniProtKB/TrEMBL
      A0A8V1AEC0

    30. XM_040648419.2 → XP_040504353.1  CAP-Gly domain-containing linker protein 1 isoform X22

      UniProtKB/TrEMBL
      A0A8V1AEC0
      Conserved Domains (3) summary
      PTZ00121
      Location:345 → 1044
      PTZ00121; MAEBL; Provisional
      smart01052
      Location:217 → 282
      CAP_GLY; Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network
      TIGR02168
      Location:705 → 1529
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052587.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      5841686..5903654 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_040684530.2 → XP_040540464.1  CAP-Gly domain-containing linker protein 1 isoform X13

      UniProtKB/TrEMBL
      A0A8V1A6W4
      Conserved Domains (3) summary
      smart01052
      Location:217 → 282
      CAP_GLY; Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network
      COG1196
      Location:335 → 695
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:649 → 1473
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    2. XM_046928044.1 → XP_046784000.1  CAP-Gly domain-containing linker protein 1 isoform X10

    3. XM_040684521.2 → XP_040540455.1  CAP-Gly domain-containing linker protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A8V1A6W4
      Conserved Domains (3) summary
      PTZ00121
      Location:335 → 1034
      PTZ00121; MAEBL; Provisional
      smart01052
      Location:217 → 282
      CAP_GLY; Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network
      TIGR02168
      Location:695 → 1519
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    4. XM_046928050.1 → XP_046784006.1  CAP-Gly domain-containing linker protein 1 isoform X18

    5. XM_046928046.1 → XP_046784002.1  CAP-Gly domain-containing linker protein 1 isoform X14

    6. XM_046928059.1 → XP_046784015.1  CAP-Gly domain-containing linker protein 1 isoform X27

    7. XM_046928045.1 → XP_046784001.1  CAP-Gly domain-containing linker protein 1 isoform X12

    8. XM_040684528.2 → XP_040540462.1  CAP-Gly domain-containing linker protein 1 isoform X11

      UniProtKB/TrEMBL
      A0A8V1A6W4
      Conserved Domains (4) summary
      COG1196
      Location:345 → 705
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:659 → 1483
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam01302
      Location:217 → 281
      CAP_GLY; CAP-Gly domain
      pfam16641
      Location:2149 → 2165
      CLIP1_ZNF; CLIP1 zinc knuckle

    9. XM_046928061.1 → XP_046784017.1  CAP-Gly domain-containing linker protein 1 isoform X29

    10. XM_046928051.1 → XP_046784007.1  CAP-Gly domain-containing linker protein 1 isoform X19

    11. XM_046928057.1 → XP_046784013.1  CAP-Gly domain-containing linker protein 1 isoform X25

    12. XM_040684522.2 → XP_040540456.1  CAP-Gly domain-containing linker protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A8V1A6W4
      Conserved Domains (3) summary
      PTZ00121
      Location:345 → 1033
      PTZ00121; MAEBL; Provisional
      smart01052
      Location:217 → 282
      CAP_GLY; Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network
      TIGR02168
      Location:694 → 1518
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    13. XM_046928048.1 → XP_046784004.1  CAP-Gly domain-containing linker protein 1 isoform X16

    14. XM_046928058.1 → XP_046784014.1  CAP-Gly domain-containing linker protein 1 isoform X26

    15. XM_046928052.1 → XP_046784008.1  CAP-Gly domain-containing linker protein 1 isoform X20

    16. XM_046928049.1 → XP_046784005.1  CAP-Gly domain-containing linker protein 1 isoform X17

    17. XM_046928060.1 → XP_046784016.1  CAP-Gly domain-containing linker protein 1 isoform X28

    18. XM_046928047.1 → XP_046784003.1  CAP-Gly domain-containing linker protein 1 isoform X15

    19. XM_046928041.1 → XP_046783997.1  CAP-Gly domain-containing linker protein 1 isoform X6

    20. XM_046928043.1 → XP_046783999.1  CAP-Gly domain-containing linker protein 1 isoform X8

    21. XM_046928039.1 → XP_046783995.1  CAP-Gly domain-containing linker protein 1 isoform X2

    22. XM_046928042.1 → XP_046783998.1  CAP-Gly domain-containing linker protein 1 isoform X7

    23. XM_046928056.1 → XP_046784012.1  CAP-Gly domain-containing linker protein 1 isoform X24

    24. XM_046928055.1 → XP_046784011.1  CAP-Gly domain-containing linker protein 1 isoform X23

    25. XM_046928040.1 → XP_046783996.1  CAP-Gly domain-containing linker protein 1 isoform X3

    26. XM_040684527.2 → XP_040540461.1  CAP-Gly domain-containing linker protein 1 isoform X11

      UniProtKB/TrEMBL
      A0A8V1A6W4
      Conserved Domains (4) summary
      COG1196
      Location:345 → 705
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02168
      Location:659 → 1483
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam01302
      Location:217 → 281
      CAP_GLY; CAP-Gly domain
      pfam16641
      Location:2149 → 2165
      CLIP1_ZNF; CLIP1 zinc knuckle

    27. XM_040684525.2 → XP_040540459.1  CAP-Gly domain-containing linker protein 1 isoform X9

      UniProtKB/TrEMBL
      A0A8V1A6W4
      Conserved Domains (3) summary
      smart01052
      Location:217 → 282
      CAP_GLY; Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network
      TIGR02168
      Location:670 → 1494
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam15921
      Location:358 → 971
      CCDC158; Coiled-coil domain-containing protein 158

    28. XM_040684517.2 → XP_040540451.1  CAP-Gly domain-containing linker protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8V1A6W4
      Conserved Domains (4) summary
      PTZ00121
      Location:345 → 1044
      PTZ00121; MAEBL; Provisional
      TIGR02168
      Location:705 → 1529
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam01302
      Location:217 → 281
      CAP_GLY; CAP-Gly domain
      pfam16641
      Location:2195 → 2211
      CLIP1_ZNF; CLIP1 zinc knuckle

    29. XM_046928053.1 → XP_046784009.1  CAP-Gly domain-containing linker protein 1 isoform X21

    30. XM_046928054.1 → XP_046784010.1  CAP-Gly domain-containing linker protein 1 isoform X22

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_204942.1: Suppressed sequence

      Description
      NM_204942.1: This RefSeq was suppressed temporarily based on the calculation that the encoded protein was shorter than proteins from the putative ortholog from human: CLIP1 (GeneID:6249).
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O42184.1 GenPept UniProtKB/Swiss-Prot:O42184

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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