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    Lrriq1 leucine-rich repeats and IQ motif containing 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 299759, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Lrriq1provided by RGD
    Official Full Name
    leucine-rich repeats and IQ motif containing 1provided by RGD
    Primary source
    RGD:1564903
    See related
    AllianceGenome:RGD:1564903
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1564903
    Summary
    Orthologous to human LRRIQ1 (leucine rich repeats and IQ motif containing 1). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Testes (RPKM 28.8), Lung (RPKM 20.0) and 1 other tissue See more
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    7q21
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (40211036..40296374, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (38317259..38409885, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (45084697..45187614, complement)

    Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene leucine-rich repeat and IQ domain-containing protein 1-like Neighboring gene ALX homeobox 1 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene uncharacterized LOC134479679 Neighboring gene small nucleolar RNA SNORA48 Neighboring gene solute carrier family 6 member 15

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    leucine-rich repeat and IQ domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086025.1 Reference GRCr8

      Range
      40211036..40296374 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063264416.1 → XP_063120486.1  leucine-rich repeat and IQ domain-containing protein 1 isoform X1

    2. XM_063264417.1 → XP_063120487.1  leucine-rich repeat and IQ domain-containing protein 1 isoform X2

    3. XM_063264418.1 → XP_063120488.1  leucine-rich repeat and IQ domain-containing protein 1 isoform X3

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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