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    Spmip8 sperm microtubule inner protein 8 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 291850, updated on 11-Apr-2024

    Summary

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    Official Symbol
    Spmip8provided by RGD
    Official Full Name
    sperm microtubule inner protein 8provided by RGD
    Primary source
    RGD:735198
    See related
    Ensembl:ENSRNOG00000013465 AllianceGenome:RGD:735198
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Tepp
    Summary
    Orthologous to human TEPP (testis, prostate and placenta expressed). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Thymus (RPKM 25.3), Lung (RPKM 22.0) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    19p13
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 19 NC_086037.1 (9713904..9728309, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 19 NC_051354.1 (9713281..9722257, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (10126346..10138446, complement)

    Chromosome 19 - NC_086037.1Genomic Context describing neighboring genes Neighboring gene U6 snRNA biogenesis phosphodiesterase 1 Neighboring gene zinc finger protein 319 Neighboring gene cyclic nucleotide gated channel subunit beta 1 Neighboring gene U2 spliceosomal RNA Neighboring gene kinesin family member C3 Neighboring gene uncharacterized LOC134483686

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. TEPP, a new gene specifically expressed in testis, prostate, and placenta and well conserved in chordates. Bera TK, et al. Biochem Biophys Res Commun, 2003 Dec 26. PMID 14652002

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in sexual reproduction NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in axonemal A tubule inner sheath ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in motile cilium IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    sperm microtubule inner protein 8
    Names
    testis, prostate and placenta expressed
    testis, prostate and placenta-expressed protein
    testis/prostate/placenta-expressed protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_201655.1 → NP_970617.1  sperm microtubule inner protein 8

      See identical proteins and their annotated locations for NP_970617.1

      Status: PROVISIONAL

      Source sequence(s)
      BK001512
      UniProtKB/Swiss-Prot
      Q6IMG9
      UniProtKB/TrEMBL
      A0A8L2R884
      Related
      ENSRNOP00000018082.3, ENSRNOT00000018082.4

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086037.1 Reference GRCr8

      Range
      9713904..9728309 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063277851.1 → XP_063133921.1  sperm microtubule inner protein 8 isoform X2

      UniProtKB/TrEMBL
      A0A8I6AE00

    2. XM_063277850.1 → XP_063133920.1  sperm microtubule inner protein 8 isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6IMG9.1 GenPept UniProtKB/Swiss-Prot:Q6IMG9

    Gene LinkOut

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